Gene detail

Detail information of GWHGAAZE029871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006487682.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Citrus sinensis]
COG	YP_004696643.1	1E-22	serine/threonine protein kinase
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	5E-175	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|A0A067DRJ3\|A0A067DRJ3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO44170.1} (Fragment)
TAIR10	AT5G10530.1	3E-143	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34665380	34667383	+
GWHAAZE00000009	mRNA	34665380	34667383	+
GWHAAZE00000009	exon	34665380	34667383	+
GWHAAZE00000009	CDS	34665380	34667383	+

Transcript Sequence
>GWHTAAZE029905 ATGGTCATCCTCAAGGACCACAACTCTAGGTTCCCCCTACTCCACTCACATAAGCTTTTTTCTTATCAAATCAAGATCGCTACCTTTCACTTCTTTCTTATACTAATCACTCATGCAACTCCAGTGACCTTCAATTTTACCAATATACTCGATCATCAAGGAGAAATAATACTGGGTACTAATGAGTCGCACTTCTCATCCCAAGGCCTCCAACTCACCCCAAATGAGCTCGGCATGGACCTGAAGTGGAGAGCCGGTCGGGCATCTTATATCAAACCTCTGCACCTTTGGGACAATACAACCGGAGAGATGGCTGACTTCACCACCAGTTTCTCCTTTATCATTGACGATATGGGAAGGTCACCATACGCTGATGGGATTACATTCTTCTTGGCTCAAAATAATTCTGTTATAACATCAGGTTACGCCCTTGGCCTTCCAATAGCCCCCACCACACTCAATGTCACCAATAAATTTGTTGCGGTGGAGTTTGATACTTACTGGAATGACTGGGACCCAGTAAACTCAACAAACTCTTCCATTGGAGATCACGTAGGAATCAACATCAACTCTCTCGTTTCTGTTAGGACTGAGAAGTGGTGGAGCAATATTACAGGTGGGGAACAAAATGAAGCTTGGATTAGTTATAATGCCACTTCACAGAATCTCAGTGTTGTCTTCACTGGTTTCCAAGATAATGCCATGGTGATACAATATGGCCTTTATTACACAGTTGATCTGAGGAAGGAATTGCCAGAATGGGTCATTTTCGGATTCTCAGCCTCCACAGGAACCCGTTTCGAGGAACATAATGTCAAATCATGGAGTTTTAATAGTTCAAGTTTACGGACGGATGATAAAAAAGGAAAGGAGAAGGGGAAGACAAGACTTATGATGGGATTGAGCATTGGTTTTTGTGTTTTGGTTGGTGGGTTGATCTTGGTTGGTTGGGGTCTTTGGATGAAAAGGACAATCGCAAAAGAAAAAGAGAACCCTGGCTTTAAAAAGGTCATGGACAACGAACTCAAAAGTTGTACCGGACCTAAGAAATTTTCACATAAGGAACTAGCAAGTGCAACTAATAATTTCGCAGAGAACAACAAACTTGGAGAGGGCGGGTTTGGTGCAGTTTATAGAGGTTTTTTGAAGGAATTAACCTCCTATATTGCTGTTAAGAGGATGTCTAGTTCTTCTAAACAGGGGGAAAAGGAGTATGCATCAGAAGTAAAGATCATTAGCCGACTGAGGCACAGGAATCTGGTGCAACTCATTGGTTGGTGCCACGAAAAAAGAGAACTACTACTTGTTTATGAGTTCATGGGAAATGGCAGCTTAGATTCCCATCTGTTCAATAAAAGGACTTTGTTAACATGGGAAATAAGGTTCAAAATTGCTCGAGGAGTGGCATCAGCATTGCTCTATCTACAGGAAGAATGGGAGAAATGTGTGGTGCACAGAGATATCAAAGCAAGCAACATTATGCTGGATTCGAGCTGCAACGCCAAACTTGGGGATTTTGGGTTAGCTAGGCTTGTTGACCATGAAAAAGGATCAAAGACAACTGATGTGGCAGGGACCATCGGGTACATGGCTCCCGAATATTTTGAGTCAGGCAACGCTAGCAAGGAATCGGATGTTTTCAGCTTTGGGGTGGTTGCTTTGGAAATAGCTTGCGGAAGAAAAGCCATTGATTTTACGACACCAAAGAGTCAAATAAGAATGGTGGAGTGGATTTGGGACCTCTATGGAAAGGGTAATCTTCTTGAAGGAGCCGATCCAAAACTAGGCAGAGATTTTGACAAACAAAGAATGGAAAGGTTGTTGATTGTTGGGCTTTGGTGTTCTCACTCAGATCCCAACCTTCGGCCATCAATAAGGCAAGCTTTTAATGTCCTTAATTTTGACTCTGAATTGCCCGTTCTCCCTCCAAAGATGCCTCCGGCAACACAACTCACGGCTACAACACAGTTGCTCTCTTCAAGCTTTGGTCAGAATACCAAATAA

Network for GWHGAAZE029871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	43	290	1.10E-59
PF00069.26	Pkinase	364	630	6.70E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.100
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.197
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.035
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.268
	SRR8316896	Juvenile bud stage	0.453
	SRR8316897	Juvenile bud stage	0.161
	SRR8316894	Third green stage	0.178
	SRR8316900	Third green stage	0.167
	SRR8316901	Third green stage	0.412
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.089
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.005
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.326
	SRR6706287	Light intensity 50%	0.313
	SRR6706288	Light intensity 20%	0.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.191
	CNS0095593	Slightly white alabastrum(diploid) 2	0.048
	CNS0095594	Slightly white alabastrum(diploid) 3	0.713
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	0.327
	CNS0095598	Silvery flower (diploied) 1	0.620
	CNS0095599	Silvery flower (diploied) 2	0.226
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.590
	CNS0095602	Golden flower (diploid) 2	0.685
	CNS0095603	Golden flower (diploid) 3	0.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.282
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.264
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.424
	CNS0095612	Silvery flower (tetraploid) 3	0.042
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.030
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	1.271
	CRR073298	Stem 2	1.387
	CRR073299	Stem 3	0.750
	CRR073300	Leaf 1	0.795
	CRR073301	Leaf 2	0.316
	CRR073302	Leaf 3	0.085
	CRR073303	Juvenile bud 1	0.214
	CRR073304	Juvenile bud 2	0.251
	CRR073305	Juvenile bud 3	0.262
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.075
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.046
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.014
	CRR073320	Tawny withering 3	0.000