Gene detail

Detail information of GWHGAAZE029869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003532595.2	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Glycine max]
COG	YP_002432120.1	9E-19	serine/threonine protein kinase
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	2E-171	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|K7L5A4\|K7L5A4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07080.2}
TAIR10	AT5G10530.1	6E-124	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34652040	34654103	+
GWHAAZE00000009	mRNA	34652040	34654103	+
GWHAAZE00000009	exon	34652040	34653276	+
GWHAAZE00000009	exon	34653358	34654103	+
GWHAAZE00000009	CDS	34652040	34653276	+
GWHAAZE00000009	CDS	34653358	34654103	+

Transcript Sequence
>GWHTAAZE029903 ATGCTTTCTTCTCCTCTCTTCAAGATCACCATTTTTTACTTCTTTCTTATTCTAATCCCACATTCAACATCACTCACCTTCGATTTTCCCAACTTTTTTTATCATCAAGGAGAAATAATTAACAACGGGTCTTACATCTCCTCTGAAGGTCTTCAAGTCACCCCAAACGAGCTCGGCACTGACCGGAGGCTAAGAGCCGGTCGAGCCACCTACATAAGCCCACTCCACCTTTGGGACAATAGCACCGGTGAGCTAGCCGACTTCTCCACCAATTTCACCTTTGTCATTGATTCCTCTGGGAGCTCACTTTACGGTGACGGCCTAGCTTTCTTCCTTGCTCGCAACAATTCTGTCATAGAAATCGGTAGAGCCATCGGCCTTCCGGTGGACTACGACACAGGTAACGCTACCGACCCGTTTGTTGCAGTGGAGTTCGATACATTTTGGAATTCAGAGTGGGATCCAGTCAATTCAACTAACTTGTCAGTCGGTGATCATGTTGGTATCAATATCAACTATTTGGGTCCTGTTCAGTTTGAGAAATGGTTTAGTAATATTACTGGTGGGGGAGTAAACGAAGCTTGGGTTAATTACAATGCTACTTCGCAGAATCTGAGTGTTGTCTTCACAGGTTTTCGGAACAATCGAACGGTAATACAATCAGGCCTGTCTTACACTGTTGATCTGAGGCGGGTGTTGCCTGAATGGGTTATTTTTGGGTTCTCGGCTGCGACAGGAACATACTTTCAGAAGAATCTCGTCAAATCTTGGAGTTTTACTAGTTCGACTTTGACGGTAGATGAAGAGCAAAGCAATGGGGGAAGGCAGAGGAGGAAAAAGAAGAATACAAGCCTTGTGGTGGGAGTGGGCGTTGGTGGGGGTGTTTTAGTTGGTGTGCTGCTTTTAGTCGGCTTTGGTTTGTGGAAGAAGAGGAGAGATAAAAAGAAGCGAGAGGACCTTGGTGTTGATGAGTTCATGGACAATGAATTCGAAATGGGAAGCGGACCTAAAAGGTTTTCGTACAAAGACTTAGCGCGTGCAACAAATCACTTTGCAGAGGATGATAAGCTTGGAGAGGGAGGTTTTGGTGGGGTATATAAAGGCTTCTTGAGGGATACAAGCACTTGTATTGCTGTTAAGAGAGTGTCAAGTACTTCTAGACAAGGGATAAAAGAATACGCGTCTGAAGTAAAGATCATTAGCCGGTTGAGGCATAGGAATCTGGTGCAACTCATCGAAAAGAGTTTGTTGACATGGGGAACAAGGTTCAAGATTGCTCAAGGTGTGGCCTCGGCTTTGCTTTATCTACACGAAGAATGGGAGCAATGTGTGGTGCATAGGGATATAAAATCAAGCAACATTATGCTGGATACGAGTTTCAATCCAAAGCTTGGGGATTTTGGGTTAGCTAGGCTTGTGGACCACGAAAAAGGGGGTCAAACAACAGTTGTGGCCGGGACCATGGGCTACATGGCTCCTGAATACATGGAAACGGGCAAGGCTAGCAAAGAATCGGATGTTTTTAGCTTTGGAGTGGTTGCCCTAGAACTCGCTTGTGGAAGAAAACCCATTAATTTTAAGGCACATGAAAGTCAAATAAGAATGGTGGAGTGGGTTTGGGACCTCTACGGAACGGGGAAGCTTCTTGATGCAGTGGACCCGAAGATGGACTTGGTTTTTGATGAACAAGAAATCGAACGGTTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTCGAAGCTCCGACCATCTATAAGGCAAGCTATTCATGTCCTTAATCTTGAAGCTCCATTGCCCAATCTCCCTTCAAAGATGCCTGTGGCCACATATTTTGCACCTCCCACATCCAATTTTTCTTTCTCTTATGGTGAGGGCAGCCAAGTAAATTCTTCGAGCTATAGTTACAACACTGATTCGTCAAAGCTTACCACATCTTCTGCAGCCTCTTCTCCATCTGCATCACTTTTGTTCACAAAATAA

Network for GWHGAAZE029869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	25	269	8.20E-57
PF00069.26	Pkinase	352	413	1.00E-09
PF00069.26	Pkinase	424	591	6.40E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.437
	SRR3591706	second leaf	1.629
	SRR3591707	mature leaf	3.498
	SRR3591708	Shoot apex	1.544
	SRR3591709	Stem	0.735
	SRR3591710	White floral bud	0.419
	SRR3591711	White flower	0.355
	SRR3591712	Green floral bud	1.041
	SRR3591713	Yellow flower	1.914
SRP173429	SRR8316895	Juvenile bud stage	1.110
	SRR8316896	Juvenile bud stage	1.460
	SRR8316897	Juvenile bud stage	0.668
	SRR8316894	Third green stage	1.117
	SRR8316900	Third green stage	2.056
	SRR8316901	Third green stage	2.007
	SRR8316898	Complete white stage	0.070
	SRR8316899	Complete white stage	2.492
	SRR8316903	Complete white stage	0.416
	SRR8316902	Silver flowering stage	0.112
	SRR8316904	Silver flowering stage	0.092
	SRR8316905	Silver flowering stage	0.013
	SRR8316906	Gold flowering stage	0.217
	SRR8316907	Gold flowering stage	0.125
	SRR8316908	Gold flowering stage	0.141
SRP132670	SRR6706286	Control	1.570
	SRR6706287	Light intensity 50%	1.954
	SRR6706288	Light intensity 20%	1.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.426
	CNS0095593	Slightly white alabastrum(diploid) 2	1.204
	CNS0095594	Slightly white alabastrum(diploid) 3	0.564
	CNS0095595	Whole white alabastrum(diploid) 2	1.096
	CNS0095596	Whole white alabastrum(diploid) 3	0.513
	CNS0095597	Whole white alabastrum(diploid) 4	0.746
	CNS0095598	Silvery flower (diploied) 1	2.403
	CNS0095599	Silvery flower (diploied) 2	0.798
	CNS0095600	Silvery flower (diploied) 3	0.673
	CNS0095601	Golden flower (diploid) 1	1.712
	CNS0095602	Golden flower (diploid) 2	2.009
	CNS0095603	Golden flower (diploid) 3	1.586
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.467
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.510
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.002
	CNS0095610	Silvery flower (tetraploid) 1	0.052
	CNS0095611	Silvery flower (tetraploid) 2	0.177
	CNS0095612	Silvery flower (tetraploid) 3	0.290
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.025
	CNS0095615	Golden flower (tetraploid) 3	0.185
CRA001975	CRR073297	Stem 1	2.771
	CRR073298	Stem 2	3.715
	CRR073299	Stem 3	4.063
	CRR073300	Leaf 1	3.763
	CRR073301	Leaf 2	2.992
	CRR073302	Leaf 3	2.881
	CRR073303	Juvenile bud 1	3.799
	CRR073304	Juvenile bud 2	0.597
	CRR073305	Juvenile bud 3	3.444
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.072
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.067
	CRR073314	Silver flowering 3	0.490
	CRR073315	Gold flowering 1	3.028
	CRR073316	Gold flowering 2	1.806
	CRR073317	Gold flowering 3	2.849
	CRR073318	Tawny withering 1	1.311
	CRR073319	Tawny withering 2	1.412
	CRR073320	Tawny withering 3	0.700