Gene detail

Detail information of GWHGAAZE029868

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770446.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Nicotiana sylvestris]
COG	YP_003248214.1	3E-16	serine/threonine protein kinase
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	7E-134	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|A0A067DRJ3\|A0A067DRJ3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO44170.1} (Fragment)
TAIR10	AT5G10530.1	6E-96	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34635019	34636872	+
GWHAAZE00000009	mRNA	34635019	34636872	+
GWHAAZE00000009	exon	34635019	34636246	+
GWHAAZE00000009	exon	34636373	34636872	+
GWHAAZE00000009	CDS	34635019	34636246	+
GWHAAZE00000009	CDS	34636373	34636872	+

Transcript Sequence
>GWHTAAZE029902 ATGTTTTCTTCTTCTTTTGTCAAGATCACTATCTTTCATTTCTTTCTTATACTAATACCTCGGTCAACATCACTAACCTTCAATTTTGCCAACATATTTGATCATGAAGAAGATATAACATTCGGTAACGACCAGTCTTATATCTCCTCCCAAGGCCTCCAAGTCACCCCAAACGAGCTCGGGACTAATCGGACACAACGAGCCGGTCGAGCCACCTACAGGAGTCCCTTCCACCTTTGGGACAATAGCTCCGGTGAGCTAGCAAACTTTTCCACCAATTTCACCTTTGTCATCGACTCCTCTGGAAGCTTACCGCATGCTGACGGGCTCGCTTTATTCCTCGCTCGAAACAATTCTGTTATCACTCCCGGTGGTGCTATTGGCCTTCCGGTGGTACCCGCAACGCCTAACGCCAGCGACCCATTTGTTGCGGTGGAGTTCGATACTTTTCGGAACTTAGGGTGGGATCCGATGAACTCGACTAACTCGTCCAATTTTGATCATGTTGGTATTGACATCAACTCATTAGCTTCTGTTCAGTTTGAGAGGTGGTTTAGCAATGTTACTGGTGGGGGAGTAAATGAAGCGTGGGTTAATTATGATGCTACTTCGCAGAATCTAAGCGTAGTCTTCACGGATTTTCGGAACAATCGAACGGTAATCCAATCAGGCCTGTCTTATACTGTTGATCTGAGGCAGGTATTGCCTGAATGGGTTATTTTCGGGTTCTCGGCCTCAACTGGGAATTACTTTCAGCAGAACACTGTCAGATCTTGGAGTTTTACTAGTTCAACTTTGAAGGTAGATGAAGATCAAAGCAACGGGGGAGCGAAGAGGACGCGGCTTGTGGTGGGAGTAAGCGTTGGCATTGGAGTGAGTGTTTTAGTTGGTGCTTTGGTTTTGGTCGGATTTGGTTTCAAAAGGAGAGAGAAAAAGAAGAGAGAGGATATTAGCATTGATGAGTTCATGGACGATGAATTTGAAATGGGTAGGGGACCTAAGAGATTTTCGTATAAAGAATTGGTGCGTGCAACAAATCACTTCGCGGAGGATGATAAGCTTGGAGAGGGAGGTTTTGGTGGAGTATATAAAGGTTTCTTAAAGGATACGAGCACTTACATTGCTGTTAAGAGGGTGTCAAGCACATCTAGACAAGGGGTAAAAGAATACGCGTCTGAAGTAAAGATCATTAGCCGGTTGAGGCATAGGAATTTGGTGCAACTCATTGGAATTGCGTCGGCTTTGCTTTATCTACACGAAGAATGGGAACAATGTGTAGTGCACAGAGATATAAAATCGAGTAACGTTATGCTGGATACAAGTTTCAATGCAAAGATCGGGGATTTTGGGTTAGCTAGGCTTGTGGACCACGAAAAAGAAGGACAAACAACAGTTGTGGCTGGGACCATGGGCTACATAGCTCCCGAATATATGGAGACGGGCAAGGCTAGCAAAGAATCGGATGTTTTTAGTTTCGGAGTGGTTGCCCTAGAAATAGCTTGTGGAAGAAAACCCATTGATTTTAAGGCACATGAAAGTCAAATACGATTGGTGGAGTGGGTTTGGGACCTCTACGGAAAAGGGAAGCTCCTTGATGCGGCGGACCCAAAGATGGACTCGGTTTTTGATGATCTAGAAATGGAACGGTTGATGATTGTTGGGCCTTTGGTGTGCTCACCCAGATTCGAAGCTTCGGGCATCTATAAGGCAAGCTATTCATGTCCTTAA

Network for GWHGAAZE029868

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	25	273	1.60E-59
PF00069.26	Pkinase	411	513	1.90E-25

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.020
	SRR3591707	mature leaf	0.781
	SRR3591708	Shoot apex	0.149
	SRR3591709	Stem	0.136
	SRR3591710	White floral bud	1.073
	SRR3591711	White flower	3.390
	SRR3591712	Green floral bud	0.429
	SRR3591713	Yellow flower	13.749
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.131
	SRR8316897	Juvenile bud stage	0.584
	SRR8316894	Third green stage	0.057
	SRR8316900	Third green stage	0.035
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.056
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.080
	SRR8316904	Silver flowering stage	0.060
	SRR8316905	Silver flowering stage	0.110
	SRR8316906	Gold flowering stage	0.248
	SRR8316907	Gold flowering stage	0.325
	SRR8316908	Gold flowering stage	0.734
SRP132670	SRR6706286	Control	0.070
	SRR6706287	Light intensity 50%	0.082
	SRR6706288	Light intensity 20%	0.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.002
	CNS0095593	Slightly white alabastrum(diploid) 2	0.151
	CNS0095594	Slightly white alabastrum(diploid) 3	0.209
	CNS0095595	Whole white alabastrum(diploid) 2	0.185
	CNS0095596	Whole white alabastrum(diploid) 3	0.250
	CNS0095597	Whole white alabastrum(diploid) 4	0.153
	CNS0095598	Silvery flower (diploied) 1	0.489
	CNS0095599	Silvery flower (diploied) 2	0.625
	CNS0095600	Silvery flower (diploied) 3	0.063
	CNS0095601	Golden flower (diploid) 1	0.265
	CNS0095602	Golden flower (diploid) 2	0.497
	CNS0095603	Golden flower (diploid) 3	0.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.182
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.126
	CNS0095612	Silvery flower (tetraploid) 3	0.476
	CNS0095613	Golden flower (tetraploid) 1	0.254
	CNS0095614	Golden flower (tetraploid) 2	0.543
	CNS0095615	Golden flower (tetraploid) 3	0.315
CRA001975	CRR073297	Stem 1	0.049
	CRR073298	Stem 2	0.136
	CRR073299	Stem 3	0.005
	CRR073300	Leaf 1	0.022
	CRR073301	Leaf 2	0.049
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.008
	CRR073304	Juvenile bud 2	0.068
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.088
	CRR073307	Third green 2	0.085
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.449
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.582
	CRR073313	Silver flowering 2	0.473
	CRR073314	Silver flowering 3	1.613
	CRR073315	Gold flowering 1	0.140
	CRR073316	Gold flowering 2	0.236
	CRR073317	Gold flowering 3	0.097
	CRR073318	Tawny withering 1	0.430
	CRR073319	Tawny withering 2	0.416
	CRR073320	Tawny withering 3	0.097