Gene detail

Detail information of GWHGAAZE029863

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006487682.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Citrus sinensis]
COG	YP_002759750.1	3E-24	putative protein kinase
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	0	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|A0A067DRJ3\|A0A067DRJ3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO44170.1} (Fragment)
TAIR10	AT5G10530.1	6E-148	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34546005	34548077	+
GWHAAZE00000009	mRNA	34546005	34548077	+
GWHAAZE00000009	exon	34546005	34548077	+
GWHAAZE00000009	CDS	34546005	34548077	+

Transcript Sequence
>GWHTAAZE029897 ATGCTTTATTCTTCCGTCTTCAAGATCACCGTCTTTCATTTCTTTCTTATACTAATACCTCACTCAACATCACTCACCTTCAATTTTTCCAACATAATTGATCATCAAGGAGATATAACATTCGGTAACAATCAGTCTTATATCTCTGCACAAGGCCTCCAAGTCACTCCGAACGAGCTCGGGATTGACAGGACACAACGAGCCGGTCGAGCCACCTACAAGACCCCCCTCCACCTCTGGGACAATAGCTCCAGTGAACTAGCAGACTTCTCCACCAATTTCACTTTTGTCATTGACTCCTCTAGAAGCAGACCCTATGCTGATGGGCTCGCTTTCTTCCTTGCTCGCAATAATTCTGTAATAACAACCGGTGGAGCCATTGGCCTACCGGTGGATCCCACCACGATTAACGCCACCGACCCGTTTGTTGCGGTGGAGTTTGATACTTTTCGGAACTTAGGGTGGGATCCGATGAACTCGACTAACTCCTCTGATTTTGATCACGTTGGTATTGACATCAACTCATTAGCTTCTGTTCAGTTTGAGAGGTGGTTTAGTAATATTACTGGTGGGGCAGTAAATGAAGCTTGGGTTAATTATGATGCTACTTCGCAGAATCTAAGCGTAGTCTTCACGGGTTTTCGGAACAATCGAACGGTAATCCAATCCAGCCTGTCTTACACTGTTGATCTGAGGCAGGTATTGCCTGAATGGGTTATTTTCGGGTTCTCGGCCTCAACCGGGAATTACTTTCAAAAGAATACTGTCAGATCTTGGAGTTTTACTAGTTCGACTTTGAAGGTAGATGAAGACCAAAGCAAAGGGGGAACGCAGAGGAGGAAGAAGAACAATACGCGGCTTGTGGTGGGAGTAAGCGTTGGTGTTGGAGTGAGTGTTTTAGTTGGTGCTTTCGTTTTGGTCGGATTTGGTTTCAAAAGGACAGAGAAAAAGAAGAGAGAGGATCTTGGCGTTGATGAGTTCATGGACAATGAATTCGAAATGGGTAGGGGACCTAAGAGGTTTTTGTACAAAGAATTAGTGCGTGCAACAAATCACTTCGCGGAGGATGACAAGCTTGGAGAGGGAGGTTTTGGTGGGGTATATAAAGGTTTTTTAAGGGATACGAGTACTTATGTTGCTGTTAAGAGGGTGTCAAGTACATCTAGACAAGGAATAAAGGAATATGTGTCTGAAGTAAAGATCATTAGCCGGTTGAGGCATAGGAATTTGGTGCAACTCATTGGTTGGTGCCATGAAAAAGGAGAGCTAATTCTCGTTTACGAGTTCATGGGAAATGGAAGCTTAGATACCCATCTCTTCAAAGAAAAGAGTTTGTTGACATGGGGAACAAGATTCAAGATTGCCCGAGGTGTGGCCTCAGCTTTGCTTTATCTACACGAAGAATGGGAGCAATGCGTGGTGCATAGAGATATAAAATCTAGCAACATTATGTTGGATATGAGTTTCAATGCAAAGCTCGGGGATTTTGGATTAGCTAGGCTTGTGGACCACCAAAAAGGGGGCCAAACAACTGTTGTGGCTGGGACCATGGGCTACATGGCTCCCGAATATATGGAAATGGGCAAGGCTAGCAAAGAATCGGATGTTTTTAGCTTTGGAGTGGTTGCCCTAGAAATAGCTTGCGGAAGAAAACCCATTGATTTTAAGGCACACGAAAGTCAAATAAGAATGGTGGAGTGGGTTTGGGACCTCTACGGAACAGGGAAGCTTCTTGATGCAGTGGACCCGAAGATGGATTCGGATTTTGATGATCAAGAAATGACACGGTTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTCGAAGCTTCGGCCATCTATAAGGCAAGCTATTCATGTCCTCAATCTCGAAGCTGCGTTGCCCAATCTCCCTTCAAAGATGCCTGTGGCAACGTATTTTGCTCGAACATCCTCGTTTCCTTTATCTTACGGTGAAGGCAGCCAAGTCAATTCTTCGAGCTATAGTTACAACACTGATTCGTCAAAGCTTACCGCAGCTTCCGCAGCTTCTTCTCCATCTGCATCACTTTTGTATACGAAATCAAGTTAA

Network for GWHGAAZE029863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	25	274	4.90E-62
PF00069.26	Pkinase	354	620	4.50E-53

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030246	molecular_function	carbohydrate binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.623
	SRR3591706	second leaf	0.066
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.187
	SRR3591709	Stem	0.033
	SRR3591710	White floral bud	1.093
	SRR3591711	White flower	1.191
	SRR3591712	Green floral bud	0.237
	SRR3591713	Yellow flower	0.681
SRP173429	SRR8316895	Juvenile bud stage	0.021
	SRR8316896	Juvenile bud stage	0.099
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.025
	SRR8316900	Third green stage	0.052
	SRR8316901	Third green stage	0.149
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.062
	SRR8316903	Complete white stage	0.012
	SRR8316902	Silver flowering stage	0.028
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.028
	SRR8316906	Gold flowering stage	0.126
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.046
	SRR6706287	Light intensity 50%	0.036
	SRR6706288	Light intensity 20%	0.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.087
	CNS0095593	Slightly white alabastrum(diploid) 2	0.227
	CNS0095594	Slightly white alabastrum(diploid) 3	0.043
	CNS0095595	Whole white alabastrum(diploid) 2	0.121
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.124
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.054
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.056
	CNS0095603	Golden flower (diploid) 3	0.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.167
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.021
	CNS0095610	Silvery flower (tetraploid) 1	0.031
	CNS0095611	Silvery flower (tetraploid) 2	0.269
	CNS0095612	Silvery flower (tetraploid) 3	0.234
	CNS0095613	Golden flower (tetraploid) 1	0.118
	CNS0095614	Golden flower (tetraploid) 2	0.123
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	0.186
	CRR073298	Stem 2	0.038
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.250
	CRR073301	Leaf 2	0.187
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.056
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.053
	CRR073311	Second white 3	0.064
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.026
	CRR073314	Silver flowering 3	0.176
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000