Detail information of GWHGAAZE029838


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN75020.13.3725E-134hypothetical protein VITISV_039940 [Vitis vinifera]
Swissprottr|Q9T072|BH025_ARATH5E-62Transcription factor bHLH25
trEMBLtr|A5BUH3|A5BUH3_VITVI1E-134Putative uncharacterized protein {ECO:0000313|EMBL:CAN75020.1}
TAIR10AT4G37850.12E-52basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3409842034100225-
GWHAAZE00000009mRNA3409842034100225-
GWHAAZE00000009exon3409842034098548-
GWHAAZE00000009exon3409902634099400-
GWHAAZE00000009exon3409970134100225-
GWHAAZE00000009CDS3409970134100225-
GWHAAZE00000009CDS3409902634099400-
GWHAAZE00000009CDS3409842034098548-
Transcript Sequence

Network for GWHGAAZE029838

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH1461931.20E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.561
SRR3591706second leaf0.211
SRR3591707mature leaf1.431
SRR3591708Shoot apex0.446
SRR3591709Stem0.936
SRR3591710White floral bud4.931
SRR3591711White flower28.808
SRR3591712Green floral bud1.906
SRR3591713Yellow flower127.389
SRP173429 SRR8316895Juvenile bud stage 0.127
SRR8316896Juvenile bud stage 0.295
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.371
SRR8316900Third green stage 1.101
SRR8316901Third green stage 1.180
SRR8316898Complete white stage 1.680
SRR8316899Complete white stage 3.314
SRR8316903Complete white stage 3.754
SRR8316902Silver flowering stage39.979
SRR8316904Silver flowering stage43.317
SRR8316905Silver flowering stage27.859
SRR8316906Gold flowering stage 313.406
SRR8316907Gold flowering stage 210.354
SRR8316908Gold flowering stage 193.506
SRP132670SRR6706286Control1.597
SRR6706287Light intensity 50%1.438
SRR6706288Light intensity 20%1.489
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.919
CNS0095593Slightly white alabastrum(diploid) 21.121
CNS0095594Slightly white alabastrum(diploid) 30.405
CNS0095595Whole white alabastrum(diploid) 20.760
CNS0095596Whole white alabastrum(diploid) 30.368
CNS0095597Whole white alabastrum(diploid) 40.102
CNS0095598Silvery flower (diploied) 11.506
CNS0095599Silvery flower (diploied) 22.540
CNS0095600Silvery flower (diploied) 328.004
CNS0095601Golden flower (diploid) 15.242
CNS0095602Golden flower (diploid) 234.727
CNS0095603Golden flower (diploid) 335.436
CNS0095604Slightly white alabastrum(tetraploid) 11.742
CNS0095605Slightly white alabastrum(tetraploid) 21.476
CNS0095606Slightly white alabastrum(tetraploid) 33.470
CNS0095607Whole white alabastrum(tetraploid) 10.644
CNS0095608Whole white alabastrum(tetraploid) 20.464
CNS0095609Whole white alabastrum(tetraploid) 32.739
CNS0095610Silvery flower (tetraploid) 137.415
CNS0095611Silvery flower (tetraploid) 259.725
CNS0095612Silvery flower (tetraploid) 379.051
CNS0095613Golden flower (tetraploid) 165.254
CNS0095614Golden flower (tetraploid) 245.007
CNS0095615Golden flower (tetraploid) 3473.412
CRA001975CRR073297Stem 11.873
CRR073298Stem 21.367
CRR073299Stem 30.713
CRR073300Leaf 11.673
CRR073301Leaf 22.075
CRR073302Leaf 32.407
CRR073303Juvenile bud 11.312
CRR073304Juvenile bud 23.560
CRR073305Juvenile bud 31.805
CRR073306Third green 111.579
CRR073307Third green 27.169
CRR073308Third green 36.407
CRR073309Second white 166.787
CRR073310Second white 2120.737
CRR073311Second white 3153.322
CRR073312Silver flowering 1273.528
CRR073313Silver flowering 2179.623
CRR073314Silver flowering 3119.380
CRR073315Gold flowering 10.032
CRR073316Gold flowering 21.206
CRR073317Gold flowering 30.384
CRR073318Tawny withering 15.439
CRR073319Tawny withering 24.140
CRR073320Tawny withering 34.408