Detail information of GWHGAAZE029835


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271528.10PREDICTED: squalene monooxygenase [Vitis vinifera]
COGYP_004346032.11E-96Squalene monooxygenase
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|F6HBJ9|F6HBJ9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49598.1}
TAIR10AT1G58440.10FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3406309634067902-
GWHAAZE00000009mRNA3406309634067902-
GWHAAZE00000009exon3406763034067902-
GWHAAZE00000009exon3406567134065782-
GWHAAZE00000009exon3406538634065560-
GWHAAZE00000009exon3406496934065137-
GWHAAZE00000009exon3406455234064770-
GWHAAZE00000009exon3406417534064450-
GWHAAZE00000009exon3406333134063609-
GWHAAZE00000009exon3406309634063216-
GWHAAZE00000009CDS3406763034067902-
GWHAAZE00000009CDS3406567134065782-
GWHAAZE00000009CDS3406538634065560-
GWHAAZE00000009CDS3406496934065137-
GWHAAZE00000009CDS3406455234064770-
GWHAAZE00000009CDS3406417534064450-
GWHAAZE00000009CDS3406333134063609-
GWHAAZE00000009CDS3406311234063216-
GWHAAZE00000009three_prime_UTR3406309634063111-
Transcript Sequence

Network for GWHGAAZE029835

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01266.25DAO721023.30E-07
PF08491.11SE2224894.70E-120
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00511SQLE, ERG1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016021cellular_componentintegral component of membrane
GO:0004506molecular_functionsqualene monooxygenase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.538
SRR3591706second leaf36.620
SRR3591707mature leaf11.171
SRR3591708Shoot apex36.459
SRR3591709Stem14.207
SRR3591710White floral bud67.534
SRR3591711White flower26.066
SRR3591712Green floral bud24.582
SRR3591713Yellow flower9.419
SRP173429 SRR8316895Juvenile bud stage 34.069
SRR8316896Juvenile bud stage 38.216
SRR8316897Juvenile bud stage 17.753
SRR8316894Third green stage 18.045
SRR8316900Third green stage 47.966
SRR8316901Third green stage 46.431
SRR8316898Complete white stage 72.358
SRR8316899Complete white stage 88.641
SRR8316903Complete white stage 98.319
SRR8316902Silver flowering stage64.591
SRR8316904Silver flowering stage89.542
SRR8316905Silver flowering stage40.043
SRR8316906Gold flowering stage 88.108
SRR8316907Gold flowering stage 106.478
SRR8316908Gold flowering stage 64.368
SRP132670SRR6706286Control68.787
SRR6706287Light intensity 50%75.763
SRR6706288Light intensity 20%69.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.563
CNS0095593Slightly white alabastrum(diploid) 216.928
CNS0095594Slightly white alabastrum(diploid) 312.819
CNS0095595Whole white alabastrum(diploid) 213.128
CNS0095596Whole white alabastrum(diploid) 310.537
CNS0095597Whole white alabastrum(diploid) 414.625
CNS0095598Silvery flower (diploied) 144.034
CNS0095599Silvery flower (diploied) 229.293
CNS0095600Silvery flower (diploied) 3100.592
CNS0095601Golden flower (diploid) 127.340
CNS0095602Golden flower (diploid) 256.881
CNS0095603Golden flower (diploid) 353.402
CNS0095604Slightly white alabastrum(tetraploid) 119.472
CNS0095605Slightly white alabastrum(tetraploid) 213.426
CNS0095606Slightly white alabastrum(tetraploid) 357.309
CNS0095607Whole white alabastrum(tetraploid) 17.988
CNS0095608Whole white alabastrum(tetraploid) 28.320
CNS0095609Whole white alabastrum(tetraploid) 327.917
CNS0095610Silvery flower (tetraploid) 169.136
CNS0095611Silvery flower (tetraploid) 275.072
CNS0095612Silvery flower (tetraploid) 3111.655
CNS0095613Golden flower (tetraploid) 143.945
CNS0095614Golden flower (tetraploid) 240.604
CNS0095615Golden flower (tetraploid) 397.116
CRA001975CRR073297Stem 159.262
CRR073298Stem 248.622
CRR073299Stem 349.084
CRR073300Leaf 162.078
CRR073301Leaf 268.368
CRR073302Leaf 359.697
CRR073303Juvenile bud 164.235
CRR073304Juvenile bud 289.481
CRR073305Juvenile bud 3101.641
CRR073306Third green 1200.753
CRR073307Third green 2153.602
CRR073308Third green 3165.722
CRR073309Second white 188.873
CRR073310Second white 296.528
CRR073311Second white 3113.335
CRR073312Silver flowering 151.599
CRR073313Silver flowering 231.081
CRR073314Silver flowering 339.218
CRR073315Gold flowering 126.947
CRR073316Gold flowering 224.107
CRR073317Gold flowering 318.463
CRR073318Tawny withering 15.988
CRR073319Tawny withering 22.668
CRR073320Tawny withering 33.649