Gene detail

Detail information of GWHGAAZE029832

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018417.1	0	Squalene monooxygenase isoform 1 [Theobroma cacao]
COG	YP_004346032.1	8E-102	Squalene monooxygenase
Swissprot	tr\|O48651\|ERG1_PANGI	0	Squalene monooxygenase
trEMBL	tr\|A0A061FG20\|A0A061FG20_THECC	0	Squalene monooxygenase isoform 1 {ECO:0000313\|EMBL:EOY15642.1}
TAIR10	AT1G58440.1	0	FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34051350	34057713	-
GWHAAZE00000009	mRNA	34051350	34057713	-
GWHAAZE00000009	exon	34057705	34057713	-
GWHAAZE00000009	exon	34054218	34054343	-
GWHAAZE00000009	exon	34053357	34053468	-
GWHAAZE00000009	exon	34052909	34053083	-
GWHAAZE00000009	exon	34052581	34052749	-
GWHAAZE00000009	exon	34052245	34052463	-
GWHAAZE00000009	exon	34051814	34052089	-
GWHAAZE00000009	exon	34051350	34051661	-
GWHAAZE00000009	CDS	34057705	34057713	-
GWHAAZE00000009	CDS	34054218	34054343	-
GWHAAZE00000009	CDS	34053357	34053468	-
GWHAAZE00000009	CDS	34052909	34053083	-
GWHAAZE00000009	CDS	34052581	34052749	-
GWHAAZE00000009	CDS	34052245	34052463	-
GWHAAZE00000009	CDS	34051814	34052089	-
GWHAAZE00000009	CDS	34051350	34051661	-

Transcript Sequence
>GWHTAAZE029866 ATGACTAAGAGCGACGAAGATCGCCCCAAGGTATCTGAAAATGGTGAATGCCTGCCGGAAGTTGCTGGAAACACGGATGTCATTATCGTTGGCGCTGGTGTTGCTGGCTCTGCCCTGGCTTGCACTCTTGCCAAGGATGGGCGCAAAGTGCTTGTCATTGAACGAGACTTAACTGAGCAAGACAGAATTGTTGGTGAATTGCTCCAGCCAGGCGGCTATTTAAAGTTGATTGAGCTGGGTCTCGAGGATTGTGTGAATGAGATTGATGCTCAACAAGTATATGGATACGCATTGTTCAAGGATGGGAAAAGTACTAGATTATCTTACCCGTTGGAAAAGTTCGATAAGGACGTGGCTGGCAGAAGCTTTCACAATGGGCGTTTCATACAGAGGATGCGTGAGAAGGCTGCAACACTACCCAATGTGAAGCTGGAACAAGGAACAGTAACTTCTCTTGTAGAAAGAAAGGGGACTGTTAAAGGAGTGCACTATAAGACTGGAGCTGGTGAAGAAATTACAGCATACGCACCTCTCACAATTGTTTGCGATGGTTGCTTTTCAAACTTGCGTCGCTCTCTTTGCACCTCTAAGGTAGACATTCCTTCATGTTTTGTGGCCTTGCTCTTAAAGAACTGTGAGCTTCCGTATCCTAATCATGGACACGTAATTCTAGCAAACCCTTCACCCATTTTGTTATATCGCATCAGTAGCACCGAGATTCGGTGTTTAGTTGATATACCTGGCAAGAAAGTGCCCTCCGTTTGCAACGGTGATATGGCCCATCATTTGAAGACCTCCGTTGCACCCCAGATCCCCACGGAACTCTCTAGTGCCTTCATATCTGCAATTGATGAAGGAAACATAAGAACGATGGCAAATAGAAGTATGCCCGCTGCTCCATATCCCACTCCAGGTGCACTCTTACTAGGGGATTCATTCAATATGAGACACCCTTTAACTGGAGGAGGAATGACAGTCGCTTTATCTGATATCGTTGTGCTTCGAGATCTTCTTAGACCACTAGCTGATTTCAATGATGCTTCTTCACTCTGCCAACATCTCGAGTCTTTCTACACCTTGCGTAAGCCAGTGGCGTCTACAATAAATACATTAGCGGGTGCCTTGTATAAGGTATTTTGCGCGTCACCTGATAAAGCAAGGAATGAATTGAGGCAAGCATGTTTTGATTATTTGAGCCTTGGTGGTAATTTTTCAAGCGGACCCGTAGCTCTACTATCTGGTCTTAACCCTCGGCCATTGAGCTTGGTACTCCATTTCTTCTCGGTTGCCATCTTTGGTGTTGGCCGCCTCTTACTTCCGTTTCCTTCACCAAAACGCGCTTGGCTTGGAGCTAGATTAATTCTGGTGAGTAGCTCAAATTTTAATTTCTTTCATTAA

Network for GWHGAAZE029832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13450.7	NAD_binding_8	29	55	6.10E-06
PF08491.11	SE	176	443	1.00E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00511	SQLE, ERG1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0004506	molecular_function	squalene monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.513
	SRR3591706	second leaf	1.958
	SRR3591707	mature leaf	0.700
	SRR3591708	Shoot apex	1.129
	SRR3591709	Stem	2.375
	SRR3591710	White floral bud	0.828
	SRR3591711	White flower	0.650
	SRR3591712	Green floral bud	1.358
	SRR3591713	Yellow flower	0.395
SRP173429	SRR8316895	Juvenile bud stage	1.004
	SRR8316896	Juvenile bud stage	7.820
	SRR8316897	Juvenile bud stage	0.252
	SRR8316894	Third green stage	1.329
	SRR8316900	Third green stage	3.695
	SRR8316901	Third green stage	2.844
	SRR8316898	Complete white stage	0.056
	SRR8316899	Complete white stage	0.627
	SRR8316903	Complete white stage	0.147
	SRR8316902	Silver flowering stage	0.476
	SRR8316904	Silver flowering stage	0.442
	SRR8316905	Silver flowering stage	0.160
	SRR8316906	Gold flowering stage	1.150
	SRR8316907	Gold flowering stage	1.939
	SRR8316908	Gold flowering stage	0.446
SRP132670	SRR6706286	Control	2.006
	SRR6706287	Light intensity 50%	2.150
	SRR6706288	Light intensity 20%	3.022
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.901
	CNS0095593	Slightly white alabastrum(diploid) 2	1.129
	CNS0095594	Slightly white alabastrum(diploid) 3	0.727
	CNS0095595	Whole white alabastrum(diploid) 2	0.620
	CNS0095596	Whole white alabastrum(diploid) 3	0.579
	CNS0095597	Whole white alabastrum(diploid) 4	0.807
	CNS0095598	Silvery flower (diploied) 1	0.760
	CNS0095599	Silvery flower (diploied) 2	0.367
	CNS0095600	Silvery flower (diploied) 3	1.614
	CNS0095601	Golden flower (diploid) 1	0.833
	CNS0095602	Golden flower (diploid) 2	1.185
	CNS0095603	Golden flower (diploid) 3	0.889
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.234
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.265
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.224
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.545
	CNS0095610	Silvery flower (tetraploid) 1	0.149
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.012
	CRR073298	Stem 2	3.587
	CRR073299	Stem 3	0.520
	CRR073300	Leaf 1	2.830
	CRR073301	Leaf 2	3.477
	CRR073302	Leaf 3	3.818
	CRR073303	Juvenile bud 1	1.663
	CRR073304	Juvenile bud 2	1.582
	CRR073305	Juvenile bud 3	2.023
	CRR073306	Third green 1	0.122
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.182
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.826
	CRR073311	Second white 3	0.653
	CRR073312	Silver flowering 1	0.044
	CRR073313	Silver flowering 2	0.015
	CRR073314	Silver flowering 3	0.236
	CRR073315	Gold flowering 1	0.370
	CRR073316	Gold flowering 2	0.567
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.395
	CRR073319	Tawny withering 2	0.921
	CRR073320	Tawny withering 3	1.012