Detail information of GWHGAAZE029814


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664484.15.31112E-85PREDICTED: pre-mRNA-processing protein 40A [Vitis vinifera]
Swissprottr|B6EUA9|PR40A_ARATH3E-55Pre-mRNA-processing protein 40A
trEMBLtr|B9S7Z7|B9S7Z7_RICCO1E-82Protein binding protein, putative {ECO:0000313|EMBL:EEF40313.1}
TAIR10AT1G44910.21E-44pre-mRNA-processing protein 40A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3372296233730135-
GWHAAZE00000009mRNA3372296233730135-
GWHAAZE00000009exon3372296233723030-
GWHAAZE00000009exon3372311533723213-
GWHAAZE00000009exon3372359933723671-
GWHAAZE00000009exon3372376133723828-
GWHAAZE00000009exon3372447733724534-
GWHAAZE00000009exon3372465733724709-
GWHAAZE00000009exon3372810433728173-
GWHAAZE00000009exon3372868533728788-
GWHAAZE00000009exon3372891333729104-
GWHAAZE00000009exon3372956033729886-
GWHAAZE00000009exon3373003133730135-
GWHAAZE00000009CDS3373003133730135-
GWHAAZE00000009CDS3372956033729886-
GWHAAZE00000009CDS3372891333729104-
GWHAAZE00000009CDS3372868533728788-
GWHAAZE00000009CDS3372810433728173-
GWHAAZE00000009CDS3372465733724709-
GWHAAZE00000009CDS3372447733724534-
GWHAAZE00000009CDS3372376133723828-
GWHAAZE00000009CDS3372359933723671-
GWHAAZE00000009CDS3372311533723213-
GWHAAZE00000009CDS3372296233723030-
Transcript Sequence

Network for GWHGAAZE029814

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00397.27WW2732994.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12821PRPF40, PRP40 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.511
SRR3591706second leaf10.561
SRR3591707mature leaf11.261
SRR3591708Shoot apex13.006
SRR3591709Stem25.511
SRR3591710White floral bud15.680
SRR3591711White flower18.719
SRR3591712Green floral bud15.223
SRR3591713Yellow flower17.476
SRP173429 SRR8316895Juvenile bud stage 12.968
SRR8316896Juvenile bud stage 13.559
SRR8316897Juvenile bud stage 9.000
SRR8316894Third green stage 5.941
SRR8316900Third green stage 11.288
SRR8316901Third green stage 10.074
SRR8316898Complete white stage 2.415
SRR8316899Complete white stage 9.237
SRR8316903Complete white stage 7.298
SRR8316902Silver flowering stage4.386
SRR8316904Silver flowering stage7.014
SRR8316905Silver flowering stage3.468
SRR8316906Gold flowering stage 9.222
SRR8316907Gold flowering stage 9.619
SRR8316908Gold flowering stage 9.955
SRP132670SRR6706286Control14.636
SRR6706287Light intensity 50%13.560
SRR6706288Light intensity 20%14.413
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.639
CNS0095593Slightly white alabastrum(diploid) 26.317
CNS0095594Slightly white alabastrum(diploid) 35.794
CNS0095595Whole white alabastrum(diploid) 24.933
CNS0095596Whole white alabastrum(diploid) 34.936
CNS0095597Whole white alabastrum(diploid) 45.734
CNS0095598Silvery flower (diploied) 19.819
CNS0095599Silvery flower (diploied) 28.115
CNS0095600Silvery flower (diploied) 310.001
CNS0095601Golden flower (diploid) 112.143
CNS0095602Golden flower (diploid) 210.942
CNS0095603Golden flower (diploid) 312.249
CNS0095604Slightly white alabastrum(tetraploid) 19.471
CNS0095605Slightly white alabastrum(tetraploid) 27.353
CNS0095606Slightly white alabastrum(tetraploid) 318.835
CNS0095607Whole white alabastrum(tetraploid) 17.288
CNS0095608Whole white alabastrum(tetraploid) 24.914
CNS0095609Whole white alabastrum(tetraploid) 39.990
CNS0095610Silvery flower (tetraploid) 116.162
CNS0095611Silvery flower (tetraploid) 214.232
CNS0095612Silvery flower (tetraploid) 317.350
CNS0095613Golden flower (tetraploid) 110.558
CNS0095614Golden flower (tetraploid) 215.357
CNS0095615Golden flower (tetraploid) 318.133
CRA001975CRR073297Stem 116.057
CRR073298Stem 214.223
CRR073299Stem 35.281
CRR073300Leaf 115.857
CRR073301Leaf 213.460
CRR073302Leaf 35.161
CRR073303Juvenile bud 13.814
CRR073304Juvenile bud 22.482
CRR073305Juvenile bud 36.441
CRR073306Third green 12.116
CRR073307Third green 20.742
CRR073308Third green 32.011
CRR073309Second white 10.667
CRR073310Second white 23.425
CRR073311Second white 33.217
CRR073312Silver flowering 12.125
CRR073313Silver flowering 21.348
CRR073314Silver flowering 33.152
CRR073315Gold flowering 10.807
CRR073316Gold flowering 24.375
CRR073317Gold flowering 30.478
CRR073318Tawny withering 14.347
CRR073319Tawny withering 24.906
CRR073320Tawny withering 35.225