Detail information of GWHGAAZE029813


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006486888.14.47821E-68PREDICTED: pre-mRNA-processing protein 40A-like [Citrus sinensis]
Swissprottr|B6EUA9|PR40A_ARATH1E-31Pre-mRNA-processing protein 40A
trEMBLtr|V4S6H3|V4S6H3_9ROSI4E-61Uncharacterized protein {ECO:0000313|EMBL:ESR35997.1}
TAIR10AT1G44910.11E-18pre-mRNA-processing protein 40A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene3371640933719427-
GWHAAZE00000009mRNA3371640933719427-
GWHAAZE00000009exon3371933533719427-
GWHAAZE00000009exon3371916933719261-
GWHAAZE00000009exon3371855233718659-
GWHAAZE00000009exon3371837833718442-
GWHAAZE00000009exon3371791633718018-
GWHAAZE00000009exon3371741633717700-
GWHAAZE00000009exon3371640933716831-
GWHAAZE00000009CDS3371933533719427-
GWHAAZE00000009CDS3371916933719261-
GWHAAZE00000009CDS3371855233718659-
GWHAAZE00000009CDS3371837833718442-
GWHAAZE00000009CDS3371791633718018-
GWHAAZE00000009CDS3371741633717700-
GWHAAZE00000009CDS3371668233716831-
GWHAAZE00000009three_prime_UTR3371640933716681-
Transcript Sequence

Network for GWHGAAZE029813

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12821PRPF40, PRP40 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.233
SRR3591706second leaf14.169
SRR3591707mature leaf14.213
SRR3591708Shoot apex25.458
SRR3591709Stem34.894
SRR3591710White floral bud18.409
SRR3591711White flower26.427
SRR3591712Green floral bud17.041
SRR3591713Yellow flower22.250
SRP173429 SRR8316895Juvenile bud stage 18.242
SRR8316896Juvenile bud stage 26.755
SRR8316897Juvenile bud stage 15.486
SRR8316894Third green stage 9.820
SRR8316900Third green stage 18.497
SRR8316901Third green stage 18.111
SRR8316898Complete white stage 3.378
SRR8316899Complete white stage 15.801
SRR8316903Complete white stage 12.958
SRR8316902Silver flowering stage9.057
SRR8316904Silver flowering stage10.838
SRR8316905Silver flowering stage4.769
SRR8316906Gold flowering stage 15.966
SRR8316907Gold flowering stage 16.593
SRR8316908Gold flowering stage 18.451
SRP132670SRR6706286Control7.742
SRR6706287Light intensity 50%7.489
SRR6706288Light intensity 20%7.146
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.298
CNS0095593Slightly white alabastrum(diploid) 231.549
CNS0095594Slightly white alabastrum(diploid) 342.652
CNS0095595Whole white alabastrum(diploid) 222.749
CNS0095596Whole white alabastrum(diploid) 323.342
CNS0095597Whole white alabastrum(diploid) 427.448
CNS0095598Silvery flower (diploied) 134.119
CNS0095599Silvery flower (diploied) 232.439
CNS0095600Silvery flower (diploied) 312.404
CNS0095601Golden flower (diploid) 140.505
CNS0095602Golden flower (diploid) 213.264
CNS0095603Golden flower (diploid) 311.962
CNS0095604Slightly white alabastrum(tetraploid) 129.383
CNS0095605Slightly white alabastrum(tetraploid) 226.929
CNS0095606Slightly white alabastrum(tetraploid) 328.349
CNS0095607Whole white alabastrum(tetraploid) 122.421
CNS0095608Whole white alabastrum(tetraploid) 221.600
CNS0095609Whole white alabastrum(tetraploid) 318.535
CNS0095610Silvery flower (tetraploid) 126.026
CNS0095611Silvery flower (tetraploid) 214.838
CNS0095612Silvery flower (tetraploid) 316.424
CNS0095613Golden flower (tetraploid) 126.499
CNS0095614Golden flower (tetraploid) 225.622
CNS0095615Golden flower (tetraploid) 313.959
CRA001975CRR073297Stem 114.787
CRR073298Stem 212.703
CRR073299Stem 35.261
CRR073300Leaf 111.083
CRR073301Leaf 210.990
CRR073302Leaf 32.679
CRR073303Juvenile bud 14.479
CRR073304Juvenile bud 22.100
CRR073305Juvenile bud 33.265
CRR073306Third green 11.361
CRR073307Third green 21.637
CRR073308Third green 30.920
CRR073309Second white 10.457
CRR073310Second white 22.033
CRR073311Second white 31.686
CRR073312Silver flowering 10.935
CRR073313Silver flowering 20.943
CRR073314Silver flowering 30.769
CRR073315Gold flowering 11.852
CRR073316Gold flowering 22.268
CRR073317Gold flowering 31.505
CRR073318Tawny withering 17.623
CRR073319Tawny withering 29.063
CRR073320Tawny withering 37.173