Gene detail

Detail information of GWHGAAZE029782

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010263289.1	2.4327E-126	PREDICTED: telomere repeat-binding factor 1-like [Nelumbo nucifera]
Swissprot	tr\|Q8VWK4\|TRB1_ARATH	7E-95	Telomere repeat-binding factor 1
trEMBL	tr\|A0A068TPK3\|A0A068TPK3_COFCA	5E-125	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97288.1}
TAIR10	AT1G49950.3	4E-76	telomere repeat binding factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32819293	32827787	-
GWHAAZE00000009	mRNA	32819293	32827787	-
GWHAAZE00000009	exon	32827593	32827787	-
GWHAAZE00000009	exon	32824844	32825020	-
GWHAAZE00000009	exon	32822509	32822729	-
GWHAAZE00000009	exon	32821467	32821551	-
GWHAAZE00000009	exon	32820312	32820395	-
GWHAAZE00000009	exon	32819293	32819682	-
GWHAAZE00000009	five_prime_UTR	32827593	32827787	-
GWHAAZE00000009	five_prime_UTR	32824994	32825020	-
GWHAAZE00000009	CDS	32824844	32824993	-
GWHAAZE00000009	CDS	32822509	32822729	-
GWHAAZE00000009	CDS	32821467	32821551	-
GWHAAZE00000009	CDS	32820312	32820395	-
GWHAAZE00000009	CDS	32819293	32819682	-

Transcript Sequence
>GWHTAAZE029816 TTATACAAATACAGAAGAACGAGAGAGAGAGAGAGGGCGGAGGCAGGTGAAGCCTTCGAATTCTCCGAATCTTGAAGCACGGTGGTGTAATTTATTTCAGCGCAGGACTTCCTCCGGTGATTTTCCATATTCCCTTTCCTGTAATCGCTGAGTAATTGAAATTGTATCTTCATTAGGACAACGAACTTATTTGAGATTCTTGCTATTTCTGTGCTATCCTTGATGGGTGCCCCAAAGCAAAAATGGACATCAGAAGAAGAAGCAGCTCTTAAGGCTGGAGTCCACAAGCACGGAGCAGGAAAATGGCGTACAATTCTTAAAGATCCACAGTTTAGTGGTGTTTTATCTCTACGTTCAAATGTAGACCTCAAGGACAAATGGAGGAATATGAGTGTGATGGCAAATGGATGGGGGTCTCGAGAGAAGGCGAGGCTAGCACTTAAAAGAATACATCATCAGGCCCCCAAAAACGATGACAACCCTATGGCTCTTGCTACTGTAGTTCAAAGTGACGAGGAAATTGTTGATGCAAAGCCTCTTGCAGTTTCTGGTGGTTCTCCACAAATGGGAGGTTCAAAAAGATCTATCATAAGGTTGGACAATCTTATAATAGAGGCTATAAACAACTTGCAGGAGCCTAGTGGGTCTAATAAGACTACAATCGGTACATACATAGAGGAACAATACTGGGCACCTCCAAACTTTAGAAGGCTGTTGTCTGCTAAACTGAAGTTTTTGACTGCAAGTGGGAAGCTGGTCAAGACGAAGCGCAAGTACAGAATTGCGGCACCAACCTTGGGAATGCCTGAGAAAAGAAGAAGCGCTTCAATGTTACTGCTCGAGGGAAGGCAAAGGGCTTATAAAGGTGATAGAGACGATTTGAATACTATTACTAAATCTCAGGTTGATGTAGAGCTAGCCAAGATGAGGAGTATGACTCCACAGGAGGCTGCTTTAGCTGCTGCTCAAGCGGTTGCCGAGGCTGAAGCTGCCATGGCTGAAGCTGAAGAGGCTGCAAGGGAGGCAGAGGCGGCCGAGGCTGATGCTGAAGCTGCTCAAGCTTTTGCTGAAGCAGCTATGAAGACACTCAAAGGGAGAACCACCCCAAGGATGGTACAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT

Network for GWHGAAZE029782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	5	55	8.00E-10
PF00538.20	Linker_histone	126	182	6.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	biological_process	nucleosome assembly
GO:0000786	cellular_component	nucleosome
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.550
	SRR3591706	second leaf	23.345
	SRR3591707	mature leaf	27.392
	SRR3591708	Shoot apex	36.696
	SRR3591709	Stem	35.421
	SRR3591710	White floral bud	34.483
	SRR3591711	White flower	29.475
	SRR3591712	Green floral bud	26.315
	SRR3591713	Yellow flower	25.260
SRP173429	SRR8316895	Juvenile bud stage	17.933
	SRR8316896	Juvenile bud stage	23.266
	SRR8316897	Juvenile bud stage	12.142
	SRR8316894	Third green stage	9.865
	SRR8316900	Third green stage	23.000
	SRR8316901	Third green stage	24.304
	SRR8316898	Complete white stage	12.484
	SRR8316899	Complete white stage	38.915
	SRR8316903	Complete white stage	18.313
	SRR8316902	Silver flowering stage	11.716
	SRR8316904	Silver flowering stage	14.618
	SRR8316905	Silver flowering stage	8.256
	SRR8316906	Gold flowering stage	32.089
	SRR8316907	Gold flowering stage	28.114
	SRR8316908	Gold flowering stage	24.620
SRP132670	SRR6706286	Control	35.459
	SRR6706287	Light intensity 50%	32.771
	SRR6706288	Light intensity 20%	33.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.805
	CNS0095593	Slightly white alabastrum(diploid) 2	19.373
	CNS0095594	Slightly white alabastrum(diploid) 3	18.788
	CNS0095595	Whole white alabastrum(diploid) 2	18.320
	CNS0095596	Whole white alabastrum(diploid) 3	15.631
	CNS0095597	Whole white alabastrum(diploid) 4	18.195
	CNS0095598	Silvery flower (diploied) 1	27.096
	CNS0095599	Silvery flower (diploied) 2	16.797
	CNS0095600	Silvery flower (diploied) 3	21.726
	CNS0095601	Golden flower (diploid) 1	33.932
	CNS0095602	Golden flower (diploid) 2	27.483
	CNS0095603	Golden flower (diploid) 3	28.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.669
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.321
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.188
	CNS0095610	Silvery flower (tetraploid) 1	26.853
	CNS0095611	Silvery flower (tetraploid) 2	31.722
	CNS0095612	Silvery flower (tetraploid) 3	20.378
	CNS0095613	Golden flower (tetraploid) 1	20.487
	CNS0095614	Golden flower (tetraploid) 2	30.276
	CNS0095615	Golden flower (tetraploid) 3	26.004
CRA001975	CRR073297	Stem 1	22.741
	CRR073298	Stem 2	20.540
	CRR073299	Stem 3	19.905
	CRR073300	Leaf 1	21.695
	CRR073301	Leaf 2	18.326
	CRR073302	Leaf 3	15.437
	CRR073303	Juvenile bud 1	15.248
	CRR073304	Juvenile bud 2	8.209
	CRR073305	Juvenile bud 3	14.633
	CRR073306	Third green 1	4.558
	CRR073307	Third green 2	4.255
	CRR073308	Third green 3	6.144
	CRR073309	Second white 1	7.636
	CRR073310	Second white 2	9.313
	CRR073311	Second white 3	5.825
	CRR073312	Silver flowering 1	4.025
	CRR073313	Silver flowering 2	5.545
	CRR073314	Silver flowering 3	4.978
	CRR073315	Gold flowering 1	13.300
	CRR073316	Gold flowering 2	15.703
	CRR073317	Gold flowering 3	10.372
	CRR073318	Tawny withering 1	15.615
	CRR073319	Tawny withering 2	16.013
	CRR073320	Tawny withering 3	17.467