Gene detail

Detail information of GWHGAAZE029736

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007199910.1	7.1849E-100	hypothetical protein PRUPE_ppa006773mg [Prunus persica]
Swissprot	tr\|P42753\|CCD31_ARATH	5E-83	Cyclin-D3-1
trEMBL	tr\|M5VJ45\|M5VJ45_PRUPE	3E-100	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01109.1}
TAIR10	AT4G34160.1	1E-67	CYCLIN D3;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32102627	32105669	+
GWHAAZE00000009	mRNA	32102627	32105669	+
GWHAAZE00000009	exon	32102627	32102866	+
GWHAAZE00000009	exon	32103554	32103782	+
GWHAAZE00000009	exon	32103975	32104111	+
GWHAAZE00000009	exon	32105403	32105669	+
GWHAAZE00000009	CDS	32102627	32102866	+
GWHAAZE00000009	CDS	32103554	32103782	+
GWHAAZE00000009	CDS	32103975	32104111	+
GWHAAZE00000009	CDS	32105403	32105669	+

Transcript Sequence
>GWHTAAZE029770 ATGATCTGTTTGGCTAGAACTGAGGCTGTGGACTGGATCCTGAAAGTGAAAGCCCATTTTGGGTTCTCATCTTTAACTGCAATCCTGGCCATTAATTATGTTGATAGGTTCATCTCCACCCTCCATTTTCAGAACAATGATGATGATAAGCCATGGATGATCCAGCTTGTTGCTGTCACTTGTCTTTCTTTGGCTGCTAAAGTTGAAGAGACACATGTTCCTCTTCTTCTAGACCTCCAAGTGGAGGACACAAAACATGTATTTGAGGCCAAAACAATTCAAAGAATGGAGATGATAGTTATGTCAGCACTTCAATGGAGGATGAACCCAGTGACCCCACTCTCATTTCTTGATCATATCACTAGAAGGCTTGGCCTTGGTGGAATAACAAAGACTAATAATAATAATTCCAATCTCCACTGGGAATTCTTAAAACAATGTGAACTCCTCCTACTCTCTGCTGTGGCTGATTGGAGGTTTGTGGGTTGTCTGCCATCTGTATTGGCTGCTGCAGCTATGATGCACGTTATGAAGCAAGTTGAGCCTTCTGATTATGTTGTTGTCGAGTACGAAAATCAGCTTATGGGTGTTCTCAAGATCAGCAAGGAGAAAGTGGATGAGTGCTATAAACTCATTGGAGAGCTATCAAAAAGTAAAATTGATTTGAATGGTCAAATGAAGCAGCAGCAGCAGCAGCAAAAGCGTAAGCATGAAGAAATTGCAGGCCCAGTCGGTGTATCGTTGGATTCAACTTATCATAGTATTAAAGGTCCGTGTGCATCTGTGGGACCATTTGTCTTCAAGAAGATTAGACTCCAAGATTATCACTACTTTCATCATTTCCCATCTCCAACCATCTCTTTCTCTCTCTAA

Network for GWHGAAZE029736

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	6	109	3.50E-26
PF02984.20	Cyclin_C	111	236	6.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.365
	SRR3591706	second leaf	16.538
	SRR3591707	mature leaf	0.978
	SRR3591708	Shoot apex	30.105
	SRR3591709	Stem	17.324
	SRR3591710	White floral bud	6.769
	SRR3591711	White flower	8.511
	SRR3591712	Green floral bud	9.281
	SRR3591713	Yellow flower	1.146
SRP173429	SRR8316895	Juvenile bud stage	12.169
	SRR8316896	Juvenile bud stage	9.642
	SRR8316897	Juvenile bud stage	5.190
	SRR8316894	Third green stage	3.485
	SRR8316900	Third green stage	3.455
	SRR8316901	Third green stage	4.364
	SRR8316898	Complete white stage	1.002
	SRR8316899	Complete white stage	9.779
	SRR8316903	Complete white stage	3.168
	SRR8316902	Silver flowering stage	1.041
	SRR8316904	Silver flowering stage	0.781
	SRR8316905	Silver flowering stage	0.181
	SRR8316906	Gold flowering stage	1.327
	SRR8316907	Gold flowering stage	0.383
	SRR8316908	Gold flowering stage	0.506
SRP132670	SRR6706286	Control	2.671
	SRR6706287	Light intensity 50%	2.565
	SRR6706288	Light intensity 20%	2.674
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.835
	CNS0095593	Slightly white alabastrum(diploid) 2	11.234
	CNS0095594	Slightly white alabastrum(diploid) 3	8.701
	CNS0095595	Whole white alabastrum(diploid) 2	10.054
	CNS0095596	Whole white alabastrum(diploid) 3	3.189
	CNS0095597	Whole white alabastrum(diploid) 4	4.526
	CNS0095598	Silvery flower (diploied) 1	9.112
	CNS0095599	Silvery flower (diploied) 2	5.571
	CNS0095600	Silvery flower (diploied) 3	7.897
	CNS0095601	Golden flower (diploid) 1	10.229
	CNS0095602	Golden flower (diploid) 2	8.293
	CNS0095603	Golden flower (diploid) 3	8.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.454
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.450
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.433
	CNS0095610	Silvery flower (tetraploid) 1	0.702
	CNS0095611	Silvery flower (tetraploid) 2	1.505
	CNS0095612	Silvery flower (tetraploid) 3	2.019
	CNS0095613	Golden flower (tetraploid) 1	0.411
	CNS0095614	Golden flower (tetraploid) 2	0.311
	CNS0095615	Golden flower (tetraploid) 3	0.468
CRA001975	CRR073297	Stem 1	5.378
	CRR073298	Stem 2	4.907
	CRR073299	Stem 3	8.528
	CRR073300	Leaf 1	2.541
	CRR073301	Leaf 2	3.280
	CRR073302	Leaf 3	3.434
	CRR073303	Juvenile bud 1	3.654
	CRR073304	Juvenile bud 2	1.766
	CRR073305	Juvenile bud 3	2.862
	CRR073306	Third green 1	0.280
	CRR073307	Third green 2	0.648
	CRR073308	Third green 3	0.617
	CRR073309	Second white 1	0.709
	CRR073310	Second white 2	0.277
	CRR073311	Second white 3	0.230
	CRR073312	Silver flowering 1	0.732
	CRR073313	Silver flowering 2	0.108
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.987
	CRR073316	Gold flowering 2	3.649
	CRR073317	Gold flowering 3	1.148
	CRR073318	Tawny withering 1	59.516
	CRR073319	Tawny withering 2	38.856
	CRR073320	Tawny withering 3	75.095