Gene detail

Detail information of GWHGAAZE029735

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011000143.1	PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Populus euphratica]
trEMBL	tr\|A0A068TML1\|A0A068TML1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97207.1}
TAIR10	AT3G19420.1	PTEN 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32083725	32092467	+
GWHAAZE00000009	mRNA	32083725	32092467	+
GWHAAZE00000009	exon	32083725	32084138	+
GWHAAZE00000009	exon	32084831	32084932	+
GWHAAZE00000009	exon	32085023	32085079	+
GWHAAZE00000009	exon	32086863	32086928	+
GWHAAZE00000009	exon	32087482	32087658	+
GWHAAZE00000009	exon	32088066	32088152	+
GWHAAZE00000009	exon	32088342	32088406	+
GWHAAZE00000009	exon	32088536	32088612	+
GWHAAZE00000009	exon	32089478	32089524	+
GWHAAZE00000009	exon	32090527	32090657	+
GWHAAZE00000009	exon	32090795	32090864	+
GWHAAZE00000009	exon	32091895	32092467	+
GWHAAZE00000009	CDS	32083725	32084138	+
GWHAAZE00000009	CDS	32084831	32084932	+
GWHAAZE00000009	CDS	32085023	32085079	+
GWHAAZE00000009	CDS	32086863	32086928	+
GWHAAZE00000009	CDS	32087482	32087658	+
GWHAAZE00000009	CDS	32088066	32088152	+
GWHAAZE00000009	CDS	32088342	32088406	+
GWHAAZE00000009	CDS	32088536	32088612	+
GWHAAZE00000009	CDS	32089478	32089524	+
GWHAAZE00000009	CDS	32090527	32090657	+
GWHAAZE00000009	CDS	32090795	32090864	+
GWHAAZE00000009	CDS	32091895	32092467	+

Transcript Sequence
>GWHTAAZE029769 ATGGATTCCAGTTCTGCTGATTCACCAACTCCTCCTGATAAAGCTCATGATGTTCAATCCTCCGCTGTGCAGCCGGAAAATTCTGCACCCCCTAAGTTATCTACTTCTGGGATAACCACATGGGCTAAGAGTTTGAAAATTCCACCGGCTTTATCAGGTTCACAAGAGGGATCATCTCCGTCTGCAAATACTGGAAAATCGCCATTTTCTCGTTTTACTAGTGGCTTTGGATTGCGCACCTCTCCAAAGGCTGCTCAGTCTGTGGATAGTCCTGATGGAGCTTCTCCATCAACAGATCAATCGGGTTTATTTGGGACACTCACAAAAGGGTTAGTTGACTCATCTAAGAGTGCAGTTAAGGCTGTTCAGATTAAAGCTCGACATGCTGTATCTCAAAACAAGCGAAGATACCAGGAAGGAGAATTTGATTTAGATATGACATACATCACAGAGAATATTATTGCTATGGGGTTCCCTGCTGGTGATATGAGCTCTGGTTTTTTTGGATTTGTAGAGGGATTGTACCGAAACCACATGGAAGAGGTGATTAAGTTCTTCGAAACCCATCACAAGGATAAATATAAAGTGTACAATCTTTGTTCTGAGAGGCTCTATGACGCATCTCTATTTGAAGGAAAGGTAGCTAGTTTCCCATTTGATGATCATAATTGCCCTCCAATTCAACTCATAATATCATTCTGTCATAGTGCTTACTCATGGTTGAAGGAGGATATTGAGAATGTTGTGGTTGTCCATTGTAAAGCTGGAATGGCAAGAACGGGTTTAATGATTTCTAGCCTCCTCCTATATCTTAAGTTTTTTCCCACAGCTGAGGAGTCTATTGACTACTACAATCAGAAAAGATGTTTTGATGGAAAAGGGCTTATTCTTCCAAGTCAGATTAGGTACGTCAAATATTTTGAACGTGTCTTAACATACTTCAACGGAGAAAATCAGCCTGGGCGAAGGTGTATGCTTAGGGGATTTCGGCTTCACAAGTGCCCTTATTGGATTAGGCCAGCCATTACCGTCTCCAATCATAATGGTGTCCTGTTCTCTTCAAAGAAGCATCCTAGAACCAAGGATTTGTCGCCTGAAGATTTTTGGTTTAGTGCACCCAAGAAAGGGATAATGGTCTTTGCTTTACCTGGAGAGCCAGGTCTTACAGAGTTGTCTGGTGATTTCAAAATCCATTTCCATGACCGACAAGGAGACTTTTACTGCTGGTTAAACACTACAATGATTGAGAACAGGAAAACTCTGAACACAAATGAACTTGATGGATTTGACAAGAGGAAACTGCCATCCCCAGGGTTTCAAGTGGAAGTGGTCCTCGTGGACCATGATGCTGCTGCAGCTGTTCCCACAAGGCCTCAAACCGAACCCACTGTCGACAAATCAGTTGAAATTTCAGGCAATAGCCCTGCCTCAACAGCTGAGGCCGCACCTGCACCTGCGCCCACACCCGCACCTGCACCCGCACCTGAACCTGAACCTGTAGCTGATAAAACCCCAAGAAAGGACACGCAAACCAGGGAAAAGGATGGCGAAAAGGACGATGATGTTTTCTCAGACAGTGAGACTGAGGAAACAGGGCAAGCCAAAGCCGCCTCTAAATCGGGCAGGTCTGGCAGCACCACCACCTCTAGTCCGGTGAATGATGCTAAAACCGACCAAGTTGCGAGCTTGACAGGCCAGACTGAGCACGTCTCTCTTGGGAATGCGGGCTCCACGGATAAAATTACTACTGGTGGCGCGAAAAACGATTCCACTGATCCTGTCGGAGAGGTAAGCGATTTCAAGATGATGGCTGCTGATGCATCTGTTTTTTCGTTTGGTGATGAAGATGATTATGAAAGTGATTGA

Network for GWHGAAZE029735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10409.10	PTEN_C2	326	445	6.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.366
	SRR3591706	second leaf	26.450
	SRR3591707	mature leaf	33.667
	SRR3591708	Shoot apex	39.952
	SRR3591709	Stem	51.266
	SRR3591710	White floral bud	47.357
	SRR3591711	White flower	60.605
	SRR3591712	Green floral bud	41.351
	SRR3591713	Yellow flower	69.609
SRP173429	SRR8316895	Juvenile bud stage	20.272
	SRR8316896	Juvenile bud stage	28.360
	SRR8316897	Juvenile bud stage	11.709
	SRR8316894	Third green stage	12.438
	SRR8316900	Third green stage	29.425
	SRR8316901	Third green stage	29.808
	SRR8316898	Complete white stage	18.482
	SRR8316899	Complete white stage	56.071
	SRR8316903	Complete white stage	29.934
	SRR8316902	Silver flowering stage	22.192
	SRR8316904	Silver flowering stage	31.149
	SRR8316905	Silver flowering stage	17.167
	SRR8316906	Gold flowering stage	59.866
	SRR8316907	Gold flowering stage	53.718
	SRR8316908	Gold flowering stage	59.276
SRP132670	SRR6706286	Control	26.977
	SRR6706287	Light intensity 50%	28.584
	SRR6706288	Light intensity 20%	30.818
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.045
	CNS0095593	Slightly white alabastrum(diploid) 2	25.726
	CNS0095594	Slightly white alabastrum(diploid) 3	26.074
	CNS0095595	Whole white alabastrum(diploid) 2	21.047
	CNS0095596	Whole white alabastrum(diploid) 3	21.978
	CNS0095597	Whole white alabastrum(diploid) 4	22.353
	CNS0095598	Silvery flower (diploied) 1	36.953
	CNS0095599	Silvery flower (diploied) 2	32.566
	CNS0095600	Silvery flower (diploied) 3	59.818
	CNS0095601	Golden flower (diploid) 1	39.642
	CNS0095602	Golden flower (diploid) 2	71.254
	CNS0095603	Golden flower (diploid) 3	67.804
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.043
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.247
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.734
	CNS0095610	Silvery flower (tetraploid) 1	48.938
	CNS0095611	Silvery flower (tetraploid) 2	55.365
	CNS0095612	Silvery flower (tetraploid) 3	49.446
	CNS0095613	Golden flower (tetraploid) 1	39.069
	CNS0095614	Golden flower (tetraploid) 2	50.603
	CNS0095615	Golden flower (tetraploid) 3	82.687
CRA001975	CRR073297	Stem 1	38.683
	CRR073298	Stem 2	37.783
	CRR073299	Stem 3	39.430
	CRR073300	Leaf 1	39.383
	CRR073301	Leaf 2	39.509
	CRR073302	Leaf 3	29.313
	CRR073303	Juvenile bud 1	41.314
	CRR073304	Juvenile bud 2	29.504
	CRR073305	Juvenile bud 3	42.339
	CRR073306	Third green 1	22.856
	CRR073307	Third green 2	20.301
	CRR073308	Third green 3	24.614
	CRR073309	Second white 1	24.666
	CRR073310	Second white 2	37.480
	CRR073311	Second white 3	33.809
	CRR073312	Silver flowering 1	32.106
	CRR073313	Silver flowering 2	26.319
	CRR073314	Silver flowering 3	30.912
	CRR073315	Gold flowering 1	21.875
	CRR073316	Gold flowering 2	37.738
	CRR073317	Gold flowering 3	23.816
	CRR073318	Tawny withering 1	45.047
	CRR073319	Tawny withering 2	47.748
	CRR073320	Tawny withering 3	55.147