Gene detail

Detail information of GWHGAAZE029734

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97462.1	0	unnamed protein product [Coffea canephora]
COG	YP_007834776.1	1E-13	Serine/threonine protein kinase
Swissprot	tr\|O48788\|Y2267_ARATH	1E-103	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|A0A068TN64\|A0A068TN64_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97462.1}
TAIR10	AT2G26730.1	1E-67	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	32068958	32071358	+
GWHAAZE00000009	mRNA	32068958	32071358	+
GWHAAZE00000009	exon	32068958	32070230	+
GWHAAZE00000009	exon	32070718	32071358	+
GWHAAZE00000009	CDS	32068958	32070230	+
GWHAAZE00000009	CDS	32070718	32071358	+

Transcript Sequence
>GWHTAAZE029768 ATGGGTTCTTCCAAATACTTCATAAATTTCATTTTAATCTCTCTTTTTTCGCTATACAAATATGTCGTCGCGGTGGATAATGTTCTTCCAGATGAATTCCATGGTCCAGAGAGGGACGCGCTTTTGGCTATCAAGGAAGGATTTAGCAACGCATTTTTGGACGATAATTGGACTAGCATTATGTGTTATTTGAACAACACACCGCAGTGGTACGGAGTTAAGTGTTTGGATGGCCGAGTGATCGAATTATCACTCGAAAATTTGGGCCTCAAGGGAGAAATTAAGGTCGATGCGTTTTTCAATCTCACTCGGCTTTCAGTTCTTAGCTTCAAGAACAATTCGTTGACGGGGAATATGATGAATTTCTCACACAACCTCATTTTGACTAGACTTGATCTATCGAGCAACAAGTTTTATGGTCCAATTTCAACTTCCCTTCTAAACCTTAATTTCTTGGAGTCATTGGAACTTCAAGAAAATAACTTCAATGGTTCAATTCCGCCGTTTAATCAATCAACCTTGAGAGAATTAAATGTGTCAGAAAACAATCTATCTGGGACCGTACCAAACACAGTAACCCTCCAGTCACTTAATTCGTCGGCCTACTCAGGCAACAGAGATTTATGTGGTCCCCCCTCTACAACGCCATGCAGTGTGAGACACGATGGTTCAGATGAACCCAAGAGTCCTCAGAGTTCGACACGTAATTCAACTGAGTCCCGATTTGGGACATTTTTGATGGTTGTGAACATCGTCGTCTTCGTGGTCCTTATCCTTCTTTTCATACTCTACTTCAAGAAGTCGCGGAAGCTTAAGAGGGAGATGAAGAAGAGCAGCGTATTGGACGAAAGTGAGGAGAAGAATGAGAAGAAAGTAGAGGTGATCATGAGAGAGAAAAGGGTGAAGAAAGTAGAGGGGATCATGAGAGAGAAAGGGGTTGTTGAGGGAGAGGAGAACGGGAAGCTTACTTTCATGGAGGACGTAGCCAGCTTCGAGCTAAGTGATCTTCTTAAGGCCTCAGCGGAGGGTTTAGGGAAAGGGAATTTTGGGAATTGTTATAAGGCAGTGCTTGACGATGGAAGAGCGGTGGCCGTGAAGAGGCTAAGGGATTTGAAACCTCTGAGTAGGGATGAGTTTGCGAGACAATTGCAAGTCATTGCTGATCAAAAACACCCAAATTTGTTGCCTCTTCTTGCTTTCTATTATTCCAAGGATGAGAGGTTTTTGGTGCACAAATTCGCGACCAATGGAAACGTCTACCATCGCCTTCACGGAGGAAGAGGGACGAGGAATCGGATACCATTTAAATGGAGCTCAAGATTATCAGTTGCTCAGGGTGTAGCTCGAGCTCTAGAGTATTTACACTTCAACAAAAAGGCACAACCGCTTGTCCCACATGGAAACTTAAAATCATCAAATGTTCTTCTAGACAATAACGAAATGGTATTTGTTACGGATTATGGGCTCACTTCACTCATTTCACTCCCTATCGCGGTCCAACGTATGGTCGTGTACAAATCGCCCGAATACTTAAGCTCGAAAAAAATCTCAAAAAAATCTGACGTGTGGAGCTACGGCTGCCTATTATTGGAGCTCCTAACAGGCCGAGTCTCGGTCCATGCTGCCAGCAATGGGGTGGACTTAGGCAGTTGGGTCCACCACGCAGTGAGGGAGGAATGGACGGCTGAAATCTTCGATCTGGAGATATCAGTGCAGAGGAGCGCTGCTCATGGGATGCTGAGATTGCTACAACTAGCCGTAGGTTGTTGCGATAAGTCGCCAGATAAGCGGCCGGATATGAGTGAGGTGGTTCGAGAGGTTGAGAATGTTAAGGTTGTCATCGATTCTGAAGACGATGAATTTTCGGACCGATCTTTAACTGATGATTCGATGTCTGCCACTTCATCAATGTAA

Network for GWHGAAZE029734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	342	605	2.10E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.098
	SRR3591706	second leaf	0.145
	SRR3591707	mature leaf	0.134
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.053
	SRR3591711	White flower	0.567
	SRR3591712	Green floral bud	0.110
	SRR3591713	Yellow flower	1.838
SRP173429	SRR8316895	Juvenile bud stage	0.186
	SRR8316896	Juvenile bud stage	0.382
	SRR8316897	Juvenile bud stage	0.056
	SRR8316894	Third green stage	0.062
	SRR8316900	Third green stage	0.203
	SRR8316901	Third green stage	0.127
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.162
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.036
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.062
	SRR8316907	Gold flowering stage	0.110
	SRR8316908	Gold flowering stage	0.176
SRP132670	SRR6706286	Control	0.072
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.083
	CNS0095593	Slightly white alabastrum(diploid) 2	0.114
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.114
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.206
	CNS0095598	Silvery flower (diploied) 1	0.116
	CNS0095599	Silvery flower (diploied) 2	0.105
	CNS0095600	Silvery flower (diploied) 3	0.231
	CNS0095601	Golden flower (diploid) 1	0.412
	CNS0095602	Golden flower (diploid) 2	0.251
	CNS0095603	Golden flower (diploid) 3	0.271
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.098
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.144
	CNS0095610	Silvery flower (tetraploid) 1	0.313
	CNS0095611	Silvery flower (tetraploid) 2	0.195
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.260
	CNS0095615	Golden flower (tetraploid) 3	0.159
CRA001975	CRR073297	Stem 1	0.109
	CRR073298	Stem 2	0.187
	CRR073299	Stem 3	0.032
	CRR073300	Leaf 1	0.086
	CRR073301	Leaf 2	0.042
	CRR073302	Leaf 3	0.031
	CRR073303	Juvenile bud 1	0.136
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.058
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.056
	CRR073312	Silver flowering 1	0.245
	CRR073313	Silver flowering 2	0.107
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.215
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.206
	CRR073319	Tawny withering 2	0.432
	CRR073320	Tawny withering 3	0.078