Gene detail

Detail information of GWHGAAZE029719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006432458.1	0	hypothetical protein CICLE_v10003226mg [Citrus clementina]
COG	YP_006914168.1	3E-26	Serine/threonine protein kinase PrkC, regulator of stationary phase
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	0	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|V4SDN3\|V4SDN3_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR45698.1}
TAIR10	AT3G55550.1	1E-146	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	31794394	31797152	+
GWHAAZE00000009	mRNA	31794394	31797152	+
GWHAAZE00000009	exon	31794394	31794975	+
GWHAAZE00000009	exon	31795688	31796853	+
GWHAAZE00000009	exon	31796927	31797152	+
GWHAAZE00000009	CDS	31794394	31794975	+
GWHAAZE00000009	CDS	31795688	31796853	+
GWHAAZE00000009	CDS	31796927	31797152	+

Transcript Sequence
>GWHTAAZE029753 ATGGTAGTACTTTTATTCTTTCTACATCTTCTCTCCCTAGGGTTTGTTAGCTCCGAAGTCAGTTTCATCTACAATGGGTTTAAGAATTCAAACCTGAGCTTGGACGGAGCAGCATACCTGAGGTCCGATGGCATTCTTGTAATAACAAAAGACATACCAAAGCTTCTTGGGCACGCACTCTATCCATTTCCACTGCGCTTCAAAGAAAACAAACCAAACAATAAATCCTCAGCAGTCACCTTCAGCACTAATTTCGTGTTCTCCATCAACCCAAAGTACTCTGAACTTGGAGGACACGGCCTAGCCTTTGTTCTCTTGTCCACCAAGCAACCAAAGGGTTGCCTTCCGAACCAGTACTTAGGACTCCCAAATTATACAACCAGCTCAGATGTCTCAACCCGAATGCTGGGAGTTGAGTTTGATGTTGTTCAAAATCTCGAACTACAAGATATCAATGATAACCATGTGGGAATAGACATATCAAGCTTAATCTCGAACATTTCTGAACCGGTTGCAGTTTTTTTAGATAACACCACCTCGGCCAATAACTCTTTCGCTCTCAAGAGCGGAGATCCATTTCAGGTATGGATAGATTATAACAGCCAAGAGATGCTGATGAATGTTACTATAGCTCCTCTTGGCCATCCGAGGCCATATCGACCTCTAATATCATTACCGATCGATCTCTCCTCGGTGATCGATGAGTTCATGTACGTGGGATTCTCTGCTTCCACGGGTTTGCTTGCCGCAACTCACAACGTGCTTGGGTGGAGCTTCCGGATTGGTGGAAAAGCACAAGAATTAGACCTACTCGAGCTACCATCTCTTATTAAGTCGGTTAAGGTAGTTCATCGGAAGGGGTTCGTCCTAGGTATGACTTTAGCTAGTTTAACTCTTCTCTTCTTGATTTTATCCGGTGCCACTCATGTTATACATAGGATTAAAAACGGCCAAGACATTTTAGAAGATTGGGAGGTCAAATATGGAGCTCGTAGATTCAAATATTCGGACCTTTTAGCTGCCACACGGGGATTCGGAGAAAGGAACCTTGTTGGATCCGGGGGATTTGAAAATGTTTACAAGGGAGTAATACCTAAAACCGGGCTAGAAGTGGCAATAAAGCGAGTCACTCAAGATTCACAACAAGGGATGAGAGAATTCGTAGCCGAAATAACAAGTATGGGGCGGCTTAGGCATCGTAATTTGGTTCAATTACATGGGTGGTGCCGAAGAGAAAACGAGCTCCTTCTTGTTTATGATTATGTGCCCAATGGAAGCCTCGACGATCTATTGTTTAGCAATCCTCAACAAAAAAAGAAGATACTAACTTGGGACCAAAGGTACAAGATTCTTATTGGGGTCGCACAGGCATTGTTGTATCTTCACGAAGAATGCGATAATATGGTAGTTCACAGAGATGTGAAGCCAAGTAACGTGCTAATAGATGCGGATCTCGAAGCAAAGCTGGGGGATTTTGGCCTCGCGAGAACTTACCAACATGGGGTCCAAACACAGACAACCCACATTGTGGGGACTTTGGGGTACCTAGCCCCCGAGATCACCCGGACGGGTAAAGCTACAAGCAGCTCAGATGTATATGGTTACGGTGCACTTATGCTAGAGGTGGCCTGTGGGAGGAGGCCGATTGAGCCACAGCGGGGTGCCCAAGAGCTGATATTGGTGGATTGGGTTAGGGAACTACAATCCCGAGGAAAGATTGTACAAGCGGTTGATGCAACTTTGGAAGAGCCGAGTATGAGAAGGGTAGTGCAGGTTATGTTGGGGGATGCTAGCCTACCTCAGCTGCCTACAAATCTTCACCGTGAACGTGCAGGAGTTATAACTGAACACTCGGGATTTTATGCAGATGAATCTGATCCTTCTAGTAGCCGAGAGACTTCATCCAAAAGTACAACCTTCTCAAGCTTTGACAAGAAGATTTCTGGTATAGAGAATACAAGGGTCACTTTTTAA

Network for GWHGAAZE029719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	20	271	1.60E-66
PF00069.26	Pkinase	349	558	9.30E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030246	molecular_function	carbohydrate binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.162
	SRR3591706	second leaf	0.214
	SRR3591707	mature leaf	0.724
	SRR3591708	Shoot apex	0.144
	SRR3591709	Stem	0.166
	SRR3591710	White floral bud	0.051
	SRR3591711	White flower	0.070
	SRR3591712	Green floral bud	0.437
	SRR3591713	Yellow flower	0.152
SRP173429	SRR8316895	Juvenile bud stage	0.404
	SRR8316896	Juvenile bud stage	0.364
	SRR8316897	Juvenile bud stage	0.505
	SRR8316894	Third green stage	0.230
	SRR8316900	Third green stage	0.729
	SRR8316901	Third green stage	0.452
	SRR8316898	Complete white stage	0.132
	SRR8316899	Complete white stage	0.370
	SRR8316903	Complete white stage	0.115
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.216
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.055
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.127
SRP132670	SRR6706286	Control	0.507
	SRR6706287	Light intensity 50%	0.418
	SRR6706288	Light intensity 20%	0.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.176
	CNS0095593	Slightly white alabastrum(diploid) 2	0.122
	CNS0095594	Slightly white alabastrum(diploid) 3	0.184
	CNS0095595	Whole white alabastrum(diploid) 2	0.028
	CNS0095596	Whole white alabastrum(diploid) 3	0.304
	CNS0095597	Whole white alabastrum(diploid) 4	0.078
	CNS0095598	Silvery flower (diploied) 1	0.205
	CNS0095599	Silvery flower (diploied) 2	0.031
	CNS0095600	Silvery flower (diploied) 3	0.478
	CNS0095601	Golden flower (diploid) 1	0.203
	CNS0095602	Golden flower (diploid) 2	0.209
	CNS0095603	Golden flower (diploid) 3	0.398
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.096
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.438
	CNS0095610	Silvery flower (tetraploid) 1	0.007
	CNS0095611	Silvery flower (tetraploid) 2	0.143
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.014
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.064
CRA001975	CRR073297	Stem 1	0.456
	CRR073298	Stem 2	0.417
	CRR073299	Stem 3	0.037
	CRR073300	Leaf 1	0.427
	CRR073301	Leaf 2	0.335
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.047
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.034
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.358
	CRR073316	Gold flowering 2	0.099
	CRR073317	Gold flowering 3	0.080
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.022
	CRR073320	Tawny withering 3	0.412