Gene detail

Detail information of GWHGAAZE029637

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003540159.1	6.4583E-165	PREDICTED: serine/threonine-protein kinase SRK2A-like [Glycine max]
COG	NP_109936.1	3E-14	Ser/Thr/Tyr protein kinase
Swissprot	tr\|Q9C958\|SRK2B_ARATH	3E-150	Serine/threonine-protein kinase SRK2B
trEMBL	tr\|I1LTF6\|I1LTF6_SOYBN	2E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29130.1}
TAIR10	AT1G60940.2	2E-119	SNF1-related protein kinase 2.10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	30321870	30326293	+
GWHAAZE00000009	mRNA	30321870	30326293	+
GWHAAZE00000009	exon	30321870	30321999	+
GWHAAZE00000009	exon	30322747	30322848	+
GWHAAZE00000009	exon	30322977	30323030	+
GWHAAZE00000009	exon	30323249	30323341	+
GWHAAZE00000009	exon	30323424	30323516	+
GWHAAZE00000009	exon	30324523	30324621	+
GWHAAZE00000009	exon	30325955	30326293	+
GWHAAZE00000009	five_prime_UTR	30321870	30321879	+
GWHAAZE00000009	CDS	30321880	30321999	+
GWHAAZE00000009	CDS	30322747	30322848	+
GWHAAZE00000009	CDS	30322977	30323030	+
GWHAAZE00000009	CDS	30323249	30323341	+
GWHAAZE00000009	CDS	30323424	30323516	+
GWHAAZE00000009	CDS	30324523	30324621	+
GWHAAZE00000009	CDS	30325955	30326293	+

Transcript Sequence
>GWHTAAZE029671 GGAGATAAAAATGGACAAGTATGAGCTTGTGAAGGATATTGGATCTGGTAATTTTGGTGTTGCTAGGCTTATGAGGAACAAATCCACCAAAGAGCTTATTGCAATGAAATATATTGAAAGAGGTCACAAGGTGGTACTAACTCCAACCCATCTTGGTATTGTCATGGAATATGCAGCGGGTGGAGAGCTCTTCGAGCGAATCTGCAATGCAGGAAGATTCAGTGAAGACGAGGCTAGATACTTCTTCCAGCAACTTATCTCAGGGGTCAGCTACTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTGGAAAACACACTCTTGGATGGGAACCCTGCACCACGCTTGAAAATATGTGATTTTGGTTACTCCAAGTCATCTGTGCTGCATTCAAGACCCAAATCAACGGTGGGCACTCCGGCATACATTGCTCCAGAGGTTCTTTCTCGGAGAGAATATGATGGCAAGCGAATAATGGCTGTTCAATACAAGATCCCAGATTATGTTCACATATCTCAAGATTGTAGGAACCTCCTTTCTCGCATTTTTGTTGCCACTGCCGCCAGGAGGATCACTATTAAAGAAATCAAGACCCACCCATGGTTTCTCAAGAACTTGCCGAGGGAGCTGACGGAACCGGCCCAAGCAATATACTACAGCAGGAAAGAAAACCCGACATTTTCCCCACAGAGCGTGGATGATATAATGAAAATCGTCGAGGAAGCCAAATCCCCACCTCCAGCTTCGCGTTTTCTCGGTGGTTTTGGGTGGGGAGAGGATGATGATGAGGTTAAGGAAGAAGAAGTGGAGGAAGAGGATGACGACGAAGAAGACGAGTATGAAAAGCGGGTTAAGGAGGCGCATGAAAGCATGAAAGTGGAGAAATTCGCCTCACCTAGTTCTTAA

Network for GWHGAAZE029637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	41	152	8.70E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	143.065
	SRR3591706	second leaf	73.785
	SRR3591707	mature leaf	85.462
	SRR3591708	Shoot apex	86.679
	SRR3591709	Stem	130.345
	SRR3591710	White floral bud	97.320
	SRR3591711	White flower	109.285
	SRR3591712	Green floral bud	109.101
	SRR3591713	Yellow flower	73.419
SRP173429	SRR8316895	Juvenile bud stage	79.213
	SRR8316896	Juvenile bud stage	111.884
	SRR8316897	Juvenile bud stage	59.489
	SRR8316894	Third green stage	53.383
	SRR8316900	Third green stage	170.682
	SRR8316901	Third green stage	179.870
	SRR8316898	Complete white stage	56.462
	SRR8316899	Complete white stage	271.923
	SRR8316903	Complete white stage	91.672
	SRR8316902	Silver flowering stage	53.656
	SRR8316904	Silver flowering stage	74.543
	SRR8316905	Silver flowering stage	35.027
	SRR8316906	Gold flowering stage	90.873
	SRR8316907	Gold flowering stage	69.676
	SRR8316908	Gold flowering stage	88.000
SRP132670	SRR6706286	Control	178.162
	SRR6706287	Light intensity 50%	165.744
	SRR6706288	Light intensity 20%	172.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	92.353
	CNS0095593	Slightly white alabastrum(diploid) 2	110.477
	CNS0095594	Slightly white alabastrum(diploid) 3	83.242
	CNS0095595	Whole white alabastrum(diploid) 2	88.342
	CNS0095596	Whole white alabastrum(diploid) 3	85.690
	CNS0095597	Whole white alabastrum(diploid) 4	87.350
	CNS0095598	Silvery flower (diploied) 1	102.406
	CNS0095599	Silvery flower (diploied) 2	89.952
	CNS0095600	Silvery flower (diploied) 3	167.457
	CNS0095601	Golden flower (diploid) 1	66.181
	CNS0095602	Golden flower (diploid) 2	127.024
	CNS0095603	Golden flower (diploid) 3	125.506
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.640
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.806
	CNS0095606	Slightly white alabastrum(tetraploid) 3	179.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.792
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	127.334
	CNS0095610	Silvery flower (tetraploid) 1	211.540
	CNS0095611	Silvery flower (tetraploid) 2	204.454
	CNS0095612	Silvery flower (tetraploid) 3	81.658
	CNS0095613	Golden flower (tetraploid) 1	79.013
	CNS0095614	Golden flower (tetraploid) 2	140.957
	CNS0095615	Golden flower (tetraploid) 3	46.970
CRA001975	CRR073297	Stem 1	130.660
	CRR073298	Stem 2	122.519
	CRR073299	Stem 3	135.529
	CRR073300	Leaf 1	214.859
	CRR073301	Leaf 2	208.414
	CRR073302	Leaf 3	176.132
	CRR073303	Juvenile bud 1	230.901
	CRR073304	Juvenile bud 2	191.655
	CRR073305	Juvenile bud 3	289.280
	CRR073306	Third green 1	56.953
	CRR073307	Third green 2	57.276
	CRR073308	Third green 3	60.422
	CRR073309	Second white 1	50.858
	CRR073310	Second white 2	39.178
	CRR073311	Second white 3	34.911
	CRR073312	Silver flowering 1	24.448
	CRR073313	Silver flowering 2	20.333
	CRR073314	Silver flowering 3	25.667
	CRR073315	Gold flowering 1	77.141
	CRR073316	Gold flowering 2	110.195
	CRR073317	Gold flowering 3	79.613
	CRR073318	Tawny withering 1	98.714
	CRR073319	Tawny withering 2	101.840
	CRR073320	Tawny withering 3	114.895