Gene detail

Detail information of GWHGAAZE029631

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI31848.3	unnamed protein product [Vitis vinifera]
COG	YP_005369294.1	valyl-tRNA synthetase
Swissprot	tr\|P93736\|SYV_ARATH	Valine--tRNA ligase
trEMBL	tr\|A0A059BZF8\|A0A059BZF8_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW71341.1}
TAIR10	AT1G14610.1	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	30209850	30227151	+
GWHAAZE00000009	mRNA	30209850	30227151	+
GWHAAZE00000009	exon	30209850	30209891	+
GWHAAZE00000009	exon	30210475	30210537	+
GWHAAZE00000009	exon	30213042	30213104	+
GWHAAZE00000009	exon	30213835	30214007	+
GWHAAZE00000009	exon	30214116	30214188	+
GWHAAZE00000009	exon	30214797	30214862	+
GWHAAZE00000009	exon	30214957	30215040	+
GWHAAZE00000009	exon	30215991	30216068	+
GWHAAZE00000009	exon	30216212	30216295	+
GWHAAZE00000009	exon	30216408	30216487	+
GWHAAZE00000009	exon	30217627	30217684	+
GWHAAZE00000009	exon	30217771	30218073	+
GWHAAZE00000009	exon	30218666	30218836	+
GWHAAZE00000009	exon	30219254	30219453	+
GWHAAZE00000009	exon	30220233	30220635	+
GWHAAZE00000009	exon	30220998	30221249	+
GWHAAZE00000009	exon	30221777	30222277	+
GWHAAZE00000009	exon	30222784	30222890	+
GWHAAZE00000009	exon	30224067	30224166	+
GWHAAZE00000009	exon	30225163	30225308	+
GWHAAZE00000009	exon	30226576	30227151	+
GWHAAZE00000009	CDS	30209850	30209891	+
GWHAAZE00000009	CDS	30210475	30210537	+
GWHAAZE00000009	CDS	30213042	30213104	+
GWHAAZE00000009	CDS	30213835	30214007	+
GWHAAZE00000009	CDS	30214116	30214188	+
GWHAAZE00000009	CDS	30214797	30214862	+
GWHAAZE00000009	CDS	30214957	30215040	+
GWHAAZE00000009	CDS	30215991	30216068	+
GWHAAZE00000009	CDS	30216212	30216295	+
GWHAAZE00000009	CDS	30216408	30216487	+
GWHAAZE00000009	CDS	30217627	30217684	+
GWHAAZE00000009	CDS	30217771	30218073	+
GWHAAZE00000009	CDS	30218666	30218836	+
GWHAAZE00000009	CDS	30219254	30219453	+
GWHAAZE00000009	CDS	30220233	30220635	+
GWHAAZE00000009	CDS	30220998	30221249	+
GWHAAZE00000009	CDS	30221777	30222277	+
GWHAAZE00000009	CDS	30222784	30222890	+
GWHAAZE00000009	CDS	30224067	30224166	+
GWHAAZE00000009	CDS	30225163	30225308	+
GWHAAZE00000009	CDS	30226576	30226750	+
GWHAAZE00000009	three_prime_UTR	30226751	30227151	+

Transcript Sequence
>GWHTAAZE029665 ATGGTGAGTAGTGATGTGCCTGACTACAATGGATTCATTACTGTAGGATCTGAGGCACAACCTCAGGTTGAAGACCCTGAAAAGAAGAAAAAGAAAGAAGAAAAGGCAAGAGAGAAAGAACTGAAAAAACTCAAGGCTGCTCAAAAAGCAGAAGCAGCTAAGCTACAGGCACAACAAGCATCGAATGCTTCCAAAACTGCTAAAAAAAAGAACGTAAAGAGAGAGACTGGGGAAGAAGAAAACCCTGATGACTATGTGGACCCAGAAACTCCTTTTGGCGAGAAGAAACAGCTTTCTCGTCAAATGGCAAAACAATACTGCCCAAGCGCAGTAGAAAAATCGTGGTATGCATGGTGGGAGAAAGCACAATACTTTGTGGCAGATTCTAGCAGCTCCAAACCTACATTTGTGATTGTTCTGCCACCACCGAATGTTACTGGGGCCCTACATATTGGTCATGCCCTAACTGCTGCCATTGAGGATACAATGATTCGCTGGCGGAGAATGTCTGGATACAATGTCTTGTGGGTCCCTGGGATGGACCATGCAGGGATAGCAACACAGGTGGTTGTGGAGAAGAAAATTGCAAAAGAAAGAAAATTAACCAGGCATGATGTGGGCCGTGAAGCATTTGTATCGGAAGTATGGAATTGGAAAAACGAGTATGGTGGCACGATATTGAAACAATTACGGTGCCTAGGTGCCTCTCTTGATTGGTCCCGTGAGTGCTTTACTATGGATGAGAAAAGATCAAAGGCTGTGACGGAGGCTTTTGTAAGGCTGTACAAGGAAGGCCTCATTTATAGGGATCTGCGATTAGTGAATTGGGATTGTGTCTTGCGAACAGCAATATCCGACATTGAAGTAGACTATTTGGATATCAAAGATAGGACACTGTTAAAGGTCCCTGGATACGAAAAACCAGTGGAGTTTGGTGTTCTAATATCATTTGCTTACCCTCTTGAAGGTGGGATTGGAGAGATTGTTGTGGCTACTACTAGAATAGAAACAATGCTTGGTGATACGGCTATTGCCATACATCCCGATGACCCAAGATACAAGCATCTTCATGGGAAATTCGCAATTCATCCATTTAATGGAAGGAAACTTCCTATAGTTTGTGATGGAATACTGGTTGATCCAAATTTTGGTAGTGGTGCTGTTAAGATAACTCCAGCCCATGACCCAAATGATTTCGAGGTTGGAAAACGGCATAATTTGGATTTCATCAACATTTTCACTGATGACGGGAAAATAAATTCCAATGGTGGTTCGGAGTTCACAGGGATGCCACGGTTCAAAGCCCGTGAGGCTGTGACTGCAGCTTTAGAGAAAAAGGGACTTTATAGAGGTATTAAAGCCAATGAGATGCGCCTCGGCGTTTGTTCAAGAAGCAATGATGTAGTGGAGCCCATGATAAAGCCTCAATGGTATGTAAACTGCAATAGCATGGCCAAGGAAGCTCTTGATGTTGTTTTTGATGTTAACAAAAAGAAAATGGAGATTATTCCGAAGCAATATGCTGCTGAATGGAAAAGGTGGCTTGATAACATTCGCGATTGGTGCATCTCGAGGCAGCTTTGGTGGGGCCACCGTGTGCCTGCATGGTATGTGACACTTGTGGATGACGAACTGAAGGAAGTAGGAGCGTACAGTGACCACTGGGTGGTTGCAAGAAATGAGGAAGAGGCTCAAGTGGAGGCTGAAAGTAAATTTGCTGGGAAGAAGTTCGAGATAACTCAAGATCCTGATGTTTTAGACACCTGGTTTTCTTCTGGGCTATTTCCTTTATCTGTGTTGGGGTGGCCGGATAATACTGAAGATTTGAGGAAGTTTTACCCAACCTCGGTTCTCGAAACAGGGCACGATATTCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATTAAACTTGGCGGGGATGTACCTTTTACAAAGGTTTATTTGCACCCCATGATTCGTGATGCACACGGGCGTAAGATGTCCAAGTCATTGGGAAACGTTATTGATCCTCTCGAAGTAATAACTGGAATATCCCTTGAAGGTCTTCACAAGAGACTAGAGCAGGGTAACTTGGATCCAACTGAACTGAAGGTCGCAAAAGAAGGGCAGGTGAAGGACTTCCCTAATGGTATTCCTGAATGTGGTACAGATGCTCTTCGGTTCTCCCTCGTCTCTTACACAGCCCAGTCAGATAAAATAAATCTGGATATCCAAAGGGTTGTTGGGTACCGACAATGGTGTAACAAGCTGTGGAATGCCATTCGGTTTGCTATGAGCAAACTTGGAGATGATTATACTCCTCCAACAAAGATTGATCCTCATAGCTTCCCATTTAGCTGCCGGTGGATACTATCAGTGCTGAACAAAGCCATATTGAAGACCATTTCGTCCTTAGAATCATACGAGTTTTCAGATGCATCAAGTGCAGTATATGCATGGTGGCAATCACAATTGTGTGACGTTTATATTGAAGTGATAAAGCCGTATTTTTCGGGTAATGATCCGAAATTTTCAGCTGAGAGAAGTGCTGCCCAAGACACCTTGTGGACGTGTCTCGATAATGGGCTGAGGTTGCTGCATCCATTTATGCCATTTGTTACGGAAGAATTGTGGCAGCGACTTCCTTCACCGAAAGATTGTAAAAGGAAAGAATCTATTATGCTATCCGATTATCCATCGGTCGTAGAGGCCTGGACAAGTGAAAAGGTAGAATATGAGATGGATATGGTAGAGTCTGCAGTAAAATCACTTCGTTCGCTTAGGGCATCATTACCTGCGAAGGAAAGACATGAAAGGCGAGCAGGTTTTGCTCTTTGCCAAACCACTGCAGTTGCAGAGATTATTCAAAGCCATGAACTGGAGATTTCAACCCTTGCTGCGTTGTCTTCTTTGGAGGTCATAAGGGAGAATGATGAAGCTCCATCTGGATGTGGGGTGTCAGTTGTAAATGAAGCTCTTTCTGTTTATCTGAAGCTTACAGGAGCACTCAATCCAGAAGCTGAACAAGAGAAGATTAAGAAAAAGATGGAGGAAATAAAAAGGCAACGAGATAGCCTAACAAAGACGATGAGCGCTTCTGGCTACAAAGAGAAGGTTCGGCCTAACATCCACCAAGAGAACGAGGCCAAGCTTGAGACACTCAGGCAACAACTTGAGTCCTTCGAGCTAGCAAGCGAACATTTGCAACGCCAAATAGCAGGAGTTTCGGAAAAATAAAAGCAATTGACTACTTAAATTCCAGTCTTGTTTTCTACACACAAACTAGTGCTTCCATGAAGGTTGCTATATTGAACTCCTTGATTGAATATTTTTCACACAATTGCATCTGAAAATTGAAATAGAGAGCCATGAATTGAGAAATGATTGCTAAAAATAGTCGTTAGGGAAGTATTTATTTGATTGCAATTTTTTCTTTATACTTACAAATTATGAGCGCTCTTTTAGAGATATTTCTGATTAAAAGTTCAATTTCTTTTTGATATGGATAATTTTTAATGGGCATTTCCATTTGAACTTTTATGTTAGGAGGAAAGAATTTTTTTCCTTCGACTGGGGTCCATGTAACCGGATCTATATTGATGTGGATGGTGATTCCTATTTAGTAGTTTTTATTACCA

Network for GWHGAAZE029631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00133.23	tRNA-synt_1	115	738	1.10E-202
PF08264.14	Anticodon_1	783	930	6.70E-41

Protein Sequence

>GWHPAAZE029649
MVSSDVPDYNGFITVGSEAQPQVEDPEKKKKKEEKAREKELKKLKAAQKAEAAKLQAQQASNASKTAKKKNVKRETGEEENPDDYVDPETPFGEKKQLSRQMAKQYCPSAVEKSWYAWWEKAQYFVADSSSSKPTFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNVLWVPGMDHAGIATQVVVEKKIAKERKLTRHDVGREAFVSEVWNWKNEYGGTILKQLRCLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYLDIKDRTLLKVPGYEKPVEFGVLISFAYPLEGGIGEIVVATTRIETMLGDTAIAIHPDDPRYKHLHGKFAIHPFNGRKLPIVCDGILVDPNFGSGAVKITPAHDPNDFEVGKRHNLDFINIFTDDGKINSNGGSEFTGMPRFKAREAVTAALEKKGLYRGIKANEMRLGVCSRSNDVVEPMIKPQWYVNCNSMAKEALDVVFDVNKKKMEIIPKQYAAEWKRWLDNIRDWCISRQLWWGHRVPAWYVTLVDDELKEVGAYSDHWVVARNEEEAQVEAESKFAGKKFEITQDPDVLDTWFSSGLFPLSVLGWPDNTEDLRKFYPTSVLETGHDILFFWVARMVMLGIKLGGDVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVITGISLEGLHKRLEQGNLDPTELKVAKEGQVKDFPNGIPECGTDALRFSLVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMSKLGDDYTPPTKIDPHSFPFSCRWILSVLNKAILKTISSLESYEFSDASSAVYAWWQSQLCDVYIEVIKPYFSGNDPKFSAERSAAQDTLWTCLDNGLRLLHPFMPFVTEELWQRLPSPKDCKRKESIMLSDYPSVVEAWTSEKVEYEMDMVESAVKSLRSLRASLPAKERHERRAGFALCQTTAVAEIIQSHELEISTLAALSSLEVIRENDEAPSGCGVSVVNEALSVYLKLTGALNPEAEQEKIKKKMEEIKRQRDSLTKTMSASGYKEKVRPNIHQENEAKLETLRQQLESFELASEHLQRQIAGVSEK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01873	VARS, valS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006438	biological_process	valyl-tRNA aminoacylation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0002161	molecular_function	aminoacyl-tRNA editing activity
GO:0004832	molecular_function	valine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.797
	SRR3591706	second leaf	25.769
	SRR3591707	mature leaf	27.986
	SRR3591708	Shoot apex	49.188
	SRR3591709	Stem	45.322
	SRR3591710	White floral bud	44.957
	SRR3591711	White flower	56.906
	SRR3591712	Green floral bud	60.162
	SRR3591713	Yellow flower	53.125
SRP173429	SRR8316895	Juvenile bud stage	34.230
	SRR8316896	Juvenile bud stage	50.062
	SRR8316897	Juvenile bud stage	24.811
	SRR8316894	Third green stage	18.611
	SRR8316900	Third green stage	53.683
	SRR8316901	Third green stage	49.781
	SRR8316898	Complete white stage	18.456
	SRR8316899	Complete white stage	61.438
	SRR8316903	Complete white stage	30.546
	SRR8316902	Silver flowering stage	20.057
	SRR8316904	Silver flowering stage	30.185
	SRR8316905	Silver flowering stage	13.094
	SRR8316906	Gold flowering stage	49.581
	SRR8316907	Gold flowering stage	46.525
	SRR8316908	Gold flowering stage	51.437
SRP132670	SRR6706286	Control	50.324
	SRR6706287	Light intensity 50%	51.107
	SRR6706288	Light intensity 20%	53.119
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.005
	CNS0095593	Slightly white alabastrum(diploid) 2	39.769
	CNS0095594	Slightly white alabastrum(diploid) 3	46.022
	CNS0095595	Whole white alabastrum(diploid) 2	40.637
	CNS0095596	Whole white alabastrum(diploid) 3	39.841
	CNS0095597	Whole white alabastrum(diploid) 4	39.452
	CNS0095598	Silvery flower (diploied) 1	36.684
	CNS0095599	Silvery flower (diploied) 2	33.917
	CNS0095600	Silvery flower (diploied) 3	57.939
	CNS0095601	Golden flower (diploid) 1	30.150
	CNS0095602	Golden flower (diploid) 2	53.999
	CNS0095603	Golden flower (diploid) 3	52.816
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.860
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.492
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.868
	CNS0095610	Silvery flower (tetraploid) 1	61.286
	CNS0095611	Silvery flower (tetraploid) 2	52.315
	CNS0095612	Silvery flower (tetraploid) 3	50.859
	CNS0095613	Golden flower (tetraploid) 1	33.875
	CNS0095614	Golden flower (tetraploid) 2	50.115
	CNS0095615	Golden flower (tetraploid) 3	55.750
CRA001975	CRR073297	Stem 1	67.658
	CRR073298	Stem 2	61.363
	CRR073299	Stem 3	61.682
	CRR073300	Leaf 1	74.345
	CRR073301	Leaf 2	68.758
	CRR073302	Leaf 3	58.473
	CRR073303	Juvenile bud 1	71.417
	CRR073304	Juvenile bud 2	51.567
	CRR073305	Juvenile bud 3	72.580
	CRR073306	Third green 1	30.887
	CRR073307	Third green 2	25.166
	CRR073308	Third green 3	34.962
	CRR073309	Second white 1	36.981
	CRR073310	Second white 2	45.832
	CRR073311	Second white 3	43.097
	CRR073312	Silver flowering 1	45.733
	CRR073313	Silver flowering 2	43.326
	CRR073314	Silver flowering 3	42.792
	CRR073315	Gold flowering 1	41.739
	CRR073316	Gold flowering 2	54.286
	CRR073317	Gold flowering 3	32.296
	CRR073318	Tawny withering 1	62.655
	CRR073319	Tawny withering 2	72.433
	CRR073320	Tawny withering 3	66.856