Gene detail

Detail information of GWHGAAZE029628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266693.2	0	PREDICTED: phospholipase D delta-like isoform X2 [Vitis vinifera]
COG	YP_003981721.1	2E-38	phospholipase D
Swissprot	tr\|Q9C5Y0\|PLDD1_ARATH	0	Phospholipase D delta
trEMBL	tr\|M0TK33\|M0TK33_MUSAM	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT4G35790.2	0	phospholipase D delta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	30146159	30156040	-
GWHAAZE00000009	mRNA	30146159	30156040	-
GWHAAZE00000009	exon	30155579	30156040	-
GWHAAZE00000009	exon	30155088	30155327	-
GWHAAZE00000009	exon	30154252	30154368	-
GWHAAZE00000009	exon	30153845	30154039	-
GWHAAZE00000009	exon	30151784	30152053	-
GWHAAZE00000009	exon	30150955	30151023	-
GWHAAZE00000009	exon	30150049	30150196	-
GWHAAZE00000009	exon	30149660	30149808	-
GWHAAZE00000009	exon	30148822	30148986	-
GWHAAZE00000009	exon	30147249	30147446	-
GWHAAZE00000009	exon	30146159	30146517	-
GWHAAZE00000009	CDS	30155579	30156040	-
GWHAAZE00000009	CDS	30155088	30155327	-
GWHAAZE00000009	CDS	30154252	30154368	-
GWHAAZE00000009	CDS	30153845	30154039	-
GWHAAZE00000009	CDS	30151784	30152053	-
GWHAAZE00000009	CDS	30150955	30151023	-
GWHAAZE00000009	CDS	30150049	30150196	-
GWHAAZE00000009	CDS	30149660	30149808	-
GWHAAZE00000009	CDS	30148822	30148986	-
GWHAAZE00000009	CDS	30147249	30147446	-
GWHAAZE00000009	CDS	30146179	30146517	-
GWHAAZE00000009	three_prime_UTR	30146159	30146178	-

Transcript Sequence
>GWHTAAZE029662 ATGGCTGATGAATTTGACGTTGCCCAGAAGGCTATGATTAAAAGACCTGAGATTTCTTGTAATTCTATATTCTTGCATGGAGAATTGGACATATGGATTAAAGAAGCAAAGTCTCTTCCAAACATGGATTTAAATTCTGAGAGAATGAGAAAATGTTTTAATATGTTTGGAACATTTGGACTAGGGAAAAAATGTAAGGATTTAGGCAAGCTCTCGGGCAAGCATTCCGTCATTACCAGTGACCCTTACGTGTCCATTTGCCTAAAAGGGTCTACGGTAGTTCAAACCAGAGTAATTTTTAACTCGGAAAACCCTACTTGGGATGAGCATTTTTGTGTACCGGTTGCTCACCCGGTAGTGGAAGTGGAATTCCAGGTCAAAGATGATGATGTTCTAGGTGCTCAACTAATCGGAGTTGTGGGGATACCCGCAGAGAATATCCTCTCGGGGAGAGAATTGATGCAAAATCAATGTTGGGAAGACATATGCCATGCCATATTGGATGCCCACCACTTGATTTATATTGTTGGGTGGTCCGTGTACCACCTTGTAAAGCTTGTGAGGGAGCCAACTAAGCCATTGCCTTCTGGAGGAGAACTTTGCTTGGGAGATTTATTGAAGTACAAGTCTGAAGAAGCGGTTCGAGTGATTATGCTCATTTGGGATGACAAAACATCCCATGACAAATTTCTCATTAAAACGGAAGGTGTTATGCAGACTCATGATGAAGAAACCAAAAAGTTCTTTAAACACTCGAGCGTCCATTGTGTGATTTGTCCTCGTTATGCGAGCGGTAAGCTCAGCATTTTCAAGCAACAGGTTGTTGGAACCCTTTTTACACATCACCAGAAGTGTGTGCTTGTTGACTCTCCAGCTACTGGGAATAAACGGAAAATTACTGCTTTCATTGGTGGTTTGGATTTATGTGATGGGCGATATGATACACCTGAACACAGACTATTTGATGGTCTTGACACTGTTTTTGCAAATGATATTCATAATCCTACGTTCCCATCTTGTACACGCGGACCGAGGCAACCGTGGCATGATTTACATTGTAGAATAGATGGTCCTGCTGCTTATGATATATTAACTAACTTTGAACAAAGATGGAGAAAAGCAAAGTGGCGAGATTTCAGGCTCAGAAGGGTCAGACATTGGCACGATGATGCGTTGCTGAAGCTAGATCGGGTCTCATGGTTACTTAATCCAGCTTCTGGTCCCAATGGCAACCGTTCTTCACATTTCTACTGTCAATCAGACCCTGAGAATTGGCATGTGCAGGTGTTTCGATCAATCGATTCAGGATCTGTGAAGGGATTTCCGAAAGATGCTAAGGAAGCCGAGGCACAGAATCTTATCTGCGGAAAGAACTTGAAAGTAGAAAAAAGCATACATACTGCTTATGTTAAAGCAATAAGATCGGCACAACACTTTGTATACATAGAGAACCAGTATTTTCTTGGATCTTCATATTGCTGGTTGTCACATAGAAGTACAGGTGCAGATAACTTAATTCCAGTGGAACTTGCGTTAAAAATTGCCAGCAAAATTAAAGCAAATGAACGTTTTGCTGTGTATATTGTAATTCCAATGTGGCCAGAGGGAGTTCCCTCCAGTTCAGCTGTGCAGGAAATACTTTTTTGGCAGGGCCAGACTATGTCTATGATGTACAAAATTATTGCAGAAGCTCTTGAAAAGGCTGGCCTTTCTGATAAGTATCACCCTCGAGATTATTTGAACTTTTACTGCCTTGGTAAACGTGAAGCTCCTCTTACACCTCAAGATAATCTACCTCCTGAGAACCGGGCAATGGGACTGGCTCAAAAGTATGGTAGATTTATGATATATGTCCATGCCAAAGGAATGATAGTTGATGATGAATATGTTATAATTGGATCAGCAAACATAAATCAGAGATCTTTGGATGGTTCAAGGGACACTGAAATTGCTATGGGCGCTTATCAGCCAAAGTACACATGGGCTGGGAAGAAGAGTCATCCACATGGCCAGGTATACGGGTATCGAATGTCTCTTTGGGCTGAACATCTTGGCATGCTCGAAGATCCATGCTGTGAGCCACACACTCTCGAATGCGTCCGGCACGTCAACAGGATGGCCGAAGACAACTGGAAGGCATTTGTGGCTGAGGAGAACGAGGAAATGATGGGCCACTTAATGGCGTATCCTCTTCAAGTAAGCAGAAATGGAGTTATCAGTTCATTGCCCGGTTATGAGTCCTTCCCCGATGTTGGTGGTAAGATTCTTGGCGCAAACACCAATCTTCCCGACGTTCTAACAACGTAATATATATATATATATTTATCCAGTTTGAGCTTTGATATTATATGATCCGTGCTCTCAATTTTGAG

Network for GWHGAAZE029628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	27	153	2.10E-24
PF00614.23	PLDc	278	312	6.40E-06
PF00614.23	PLDc	615	641	6.30E-08
PF12357.9	PLD_C	692	758	3.90E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.804
	SRR3591706	second leaf	1.436
	SRR3591707	mature leaf	1.047
	SRR3591708	Shoot apex	2.990
	SRR3591709	Stem	2.319
	SRR3591710	White floral bud	13.679
	SRR3591711	White flower	1.187
	SRR3591712	Green floral bud	14.527
	SRR3591713	Yellow flower	0.536
SRP173429	SRR8316895	Juvenile bud stage	3.270
	SRR8316896	Juvenile bud stage	4.531
	SRR8316897	Juvenile bud stage	2.561
	SRR8316894	Third green stage	2.927
	SRR8316900	Third green stage	8.920
	SRR8316901	Third green stage	8.764
	SRR8316898	Complete white stage	1.281
	SRR8316899	Complete white stage	4.617
	SRR8316903	Complete white stage	1.985
	SRR8316902	Silver flowering stage	1.474
	SRR8316904	Silver flowering stage	2.089
	SRR8316905	Silver flowering stage	1.172
	SRR8316906	Gold flowering stage	3.178
	SRR8316907	Gold flowering stage	2.666
	SRR8316908	Gold flowering stage	0.951
SRP132670	SRR6706286	Control	6.971
	SRR6706287	Light intensity 50%	7.422
	SRR6706288	Light intensity 20%	7.465
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.729
	CNS0095593	Slightly white alabastrum(diploid) 2	5.841
	CNS0095594	Slightly white alabastrum(diploid) 3	6.043
	CNS0095595	Whole white alabastrum(diploid) 2	15.216
	CNS0095596	Whole white alabastrum(diploid) 3	17.981
	CNS0095597	Whole white alabastrum(diploid) 4	19.742
	CNS0095598	Silvery flower (diploied) 1	3.887
	CNS0095599	Silvery flower (diploied) 2	2.635
	CNS0095600	Silvery flower (diploied) 3	1.877
	CNS0095601	Golden flower (diploid) 1	1.842
	CNS0095602	Golden flower (diploid) 2	1.161
	CNS0095603	Golden flower (diploid) 3	1.503
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.710
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.274
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.578
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.649
	CNS0095610	Silvery flower (tetraploid) 1	2.738
	CNS0095611	Silvery flower (tetraploid) 2	2.316
	CNS0095612	Silvery flower (tetraploid) 3	4.320
	CNS0095613	Golden flower (tetraploid) 1	0.843
	CNS0095614	Golden flower (tetraploid) 2	1.470
	CNS0095615	Golden flower (tetraploid) 3	2.509
CRA001975	CRR073297	Stem 1	4.900
	CRR073298	Stem 2	3.783
	CRR073299	Stem 3	1.390
	CRR073300	Leaf 1	10.684
	CRR073301	Leaf 2	7.790
	CRR073302	Leaf 3	1.727
	CRR073303	Juvenile bud 1	7.035
	CRR073304	Juvenile bud 2	3.558
	CRR073305	Juvenile bud 3	2.185
	CRR073306	Third green 1	1.840
	CRR073307	Third green 2	1.618
	CRR073308	Third green 3	1.448
	CRR073309	Second white 1	0.054
	CRR073310	Second white 2	0.549
	CRR073311	Second white 3	0.220
	CRR073312	Silver flowering 1	1.475
	CRR073313	Silver flowering 2	1.333
	CRR073314	Silver flowering 3	0.483
	CRR073315	Gold flowering 1	1.464
	CRR073316	Gold flowering 2	1.461
	CRR073317	Gold flowering 3	0.716
	CRR073318	Tawny withering 1	3.956
	CRR073319	Tawny withering 2	2.759
	CRR073320	Tawny withering 3	2.860