Gene detail

Detail information of GWHGAAZE029608

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011087666.1	PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Sesamum indicum]
COG	YP_007058767.1	chaperone protein DnaK
Swissprot	tr\|Q02028\|HSP7S_PEA	Stromal 70 kDa heat shock-related protein, chloroplastic (Precursor)
trEMBL	tr\|A0A022R365\|A0A022R365_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU33275.1}
TAIR10	AT4G24280.1	chloroplast heat shock protein 70-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	29814903	29820286	+
GWHAAZE00000009	mRNA	29814903	29820286	+
GWHAAZE00000009	exon	29814903	29815457	+
GWHAAZE00000009	exon	29816575	29816827	+
GWHAAZE00000009	exon	29817325	29817404	+
GWHAAZE00000009	exon	29817510	29817652	+
GWHAAZE00000009	exon	29817745	29817843	+
GWHAAZE00000009	exon	29818081	29818270	+
GWHAAZE00000009	exon	29818641	29819039	+
GWHAAZE00000009	exon	29819876	29820286	+
GWHAAZE00000009	CDS	29814903	29815457	+
GWHAAZE00000009	CDS	29816575	29816827	+
GWHAAZE00000009	CDS	29817325	29817404	+
GWHAAZE00000009	CDS	29817510	29817652	+
GWHAAZE00000009	CDS	29817745	29817843	+
GWHAAZE00000009	CDS	29818081	29818270	+
GWHAAZE00000009	CDS	29818641	29819039	+
GWHAAZE00000009	CDS	29819876	29820286	+

Transcript Sequence
>GWHTAAZE029642 ATGGCCTCTTCAGTAGCTCAGATTAATGTTTTTGGAGCCACTCCTTCAACATTCAGTTCGAAGAATTTCACTTCGAATTCTTCTTCTCGAACGTTATTCTTGGGGCAGAGATTGGGTAAGAACAATACGGTTTCGCTCCGAATCCCTAAGAGCAATAACAGAGTGAGAAGGAATTCCGGATATGCACCGTTGAGAATTGTATCGGAGAAGGTGGTGGGGATTGATTTAGGGACTACGAACTCGGCGGTGGGGGCGATGGAAGGAGGTAAGCCGGTGATTGTGACCAACGCCGAGGGGCAGCGCACGACGCCGTCTGTGGTGGCGTATACGAAGAATGGGGACCGGCTTGTTGGTCAGATTGCGAAGAGACAGGCTGTGGTGAATCCCGAGAATACTTTTTTCTCGGTGAAGAGGTTTATAGGGAGGAAAATGTCTGAGGTTGACGAGGAATCTAAGCAGGTTTCGTATACTGTGGTGAGAGATGAGAATGGAAATGTGAAGCTTGATTGCCCTGCAATAGGGAAACAATTTGCTGCTGAGGAAATTTCGGCTCAGGTTTTGAGAAAGCTGGTGGACGATGCATCGAAGTTTTTAAACGATAAAGTCACTAAAGCCGTTGTCACAGTTCCTGCTTACTTCAATGATTCCCAGAGGACAGCAACAAAGGATGCTGGTCGCATTGCTGGCTTGGAAGTTCTTCGAATCATCAATGAACCTACTGCTGCCTCACTGGCCTATGGCTTTGAAAGGAAGAACAATGAAACAATTCTAGTGTTTGACCTTGGAGGTGGTACATTTGATGTTTCAGTTCTCGAGGTTGGTGATGGAGTGTTTGAAGTGCTTTCCACTTCTGGGGATACACATCTTGGTGGAGATGATTTTGACAAGAGAGTTGTTGATTGGCTTGCTGAAAGCTTCAAGAAAGATGAAGGCATTGATCTGTTGAAGGACAAACAAGCTCTTCAACGTCTCACAGAGACAGCCGAGAAAGCTAAGATGGAGCTGTCATCTTTAACACAGGCTAGCATTAGTTTGCCTTTCATCACAGCCACTGCAGATGGTCCCAAACATATCGATACCACCCTTACTCGGGCAAAGTTTGAGGAACTGTGTGCTGATCTTCTTGATAGGCTTAAAACCCCAGTTGAAAATTCCTTGAGGGATGCTAAGCTCTCGTTCAAAGATATAGATGAAGTGATTCTAGTTGGTGGTTCCACACGTATTCCAGCTGTTCAAGGAGTTGTCAAGAAATTGACAGGAAAGGAACCAAATGTTACAGTCAATCCCGATGAAGTTGTTGCTCTTGGAGCTGCAGTTCAGGCTGGTGTTTTGGCTGGAGATGTAAGCGATATCGTCCTTTTGGATGTGACACCGCTGTCAATTGGGCTGGAAACCCTAGGTGGCGTAATGACAAAGATTATTCCCAGAAATACAACACTGCCCACCTCAAAATCAGAAGTGTTCTCAACCGCTGCTGATGGACAAACAAGTGTAGAGATTAATGTTCTTCAAGGGGAGAGAGAGTTTGTAAGAGATAACAAGTCTCTTGGCAGCTTCCGTCTTGATGGAATCCCACCTGCCCCTCGTGGAGTTCCTCAAGTTGAAGTCAAATTTGACATTGATGCAAATGGCATTCTCTCTGTCACCGCTATTGATAAAGGCACCGGGAAGAAACAAGATATTACAATTACCGGTGCGAGCACTTTGCCTAATGATGAGGTAGCGAGGATGGTTAACGAAGCCGAAAAGTTTGCCAAGGAAGACAAGGAGAAGAGAGACGCCATTGACACAAAGAACCAAGCCGATTCAGTCGTATACCAAACGGAGAAACAGCTCAAGGAACTGGGAGAAAAGGTTCCAGCTGAGGTCAAAGACAAGGTCGAGGCTAAGCTTGGTGAACTCAAGGAAGCAATCTCTGGTGGATCGACCCAGGCCATAAAGGACTCCATGGCTGCACTTAACCAGGAAGTAATGCAGCTTGGCCAGTCCCTCTATAACCAGCCTGGTGGTGCAGCCCCTGGTGCAGGTCCTGCACCTGGTGGCGAGGCCGGCCCTTCAGAGCCATCATCGGGTAGCAAGGGATCCGAAGGTGACGATGTCATTGATGCCGACTTCACCGACAGCAAGTGA

Network for GWHGAAZE029608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	71	665	1.10E-260

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03283	HSPA1s	Spliceosome	map03040
		Protein processing in endoplasmic reticulum	map04141
		MAPK signaling pathway	map04010
		Endocytosis	map04144
		Antigen processing and presentation	map04612
		Estrogen signaling pathway	map04915
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	184.123
	SRR3591706	second leaf	322.608
	SRR3591707	mature leaf	308.838
	SRR3591708	Shoot apex	261.503
	SRR3591709	Stem	143.205
	SRR3591710	White floral bud	191.213
	SRR3591711	White flower	270.177
	SRR3591712	Green floral bud	163.471
	SRR3591713	Yellow flower	285.659
SRP173429	SRR8316895	Juvenile bud stage	176.262
	SRR8316896	Juvenile bud stage	259.332
	SRR8316897	Juvenile bud stage	134.610
	SRR8316894	Third green stage	78.216
	SRR8316900	Third green stage	276.747
	SRR8316901	Third green stage	225.098
	SRR8316898	Complete white stage	100.641
	SRR8316899	Complete white stage	236.291
	SRR8316903	Complete white stage	146.265
	SRR8316902	Silver flowering stage	135.231
	SRR8316904	Silver flowering stage	180.347
	SRR8316905	Silver flowering stage	109.710
	SRR8316906	Gold flowering stage	379.447
	SRR8316907	Gold flowering stage	350.587
	SRR8316908	Gold flowering stage	378.021
SRP132670	SRR6706286	Control	209.565
	SRR6706287	Light intensity 50%	209.129
	SRR6706288	Light intensity 20%	215.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	127.324
	CNS0095593	Slightly white alabastrum(diploid) 2	111.626
	CNS0095594	Slightly white alabastrum(diploid) 3	94.016
	CNS0095595	Whole white alabastrum(diploid) 2	107.140
	CNS0095596	Whole white alabastrum(diploid) 3	115.107
	CNS0095597	Whole white alabastrum(diploid) 4	84.814
	CNS0095598	Silvery flower (diploied) 1	189.166
	CNS0095599	Silvery flower (diploied) 2	219.634
	CNS0095600	Silvery flower (diploied) 3	390.714
	CNS0095601	Golden flower (diploid) 1	240.195
	CNS0095602	Golden flower (diploid) 2	374.660
	CNS0095603	Golden flower (diploid) 3	369.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	143.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	115.946
	CNS0095606	Slightly white alabastrum(tetraploid) 3	278.995
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.953
	CNS0095608	Whole white alabastrum(tetraploid) 2	70.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	266.789
	CNS0095610	Silvery flower (tetraploid) 1	310.275
	CNS0095611	Silvery flower (tetraploid) 2	406.590
	CNS0095612	Silvery flower (tetraploid) 3	562.082
	CNS0095613	Golden flower (tetraploid) 1	243.357
	CNS0095614	Golden flower (tetraploid) 2	335.477
	CNS0095615	Golden flower (tetraploid) 3	426.987
CRA001975	CRR073297	Stem 1	250.890
	CRR073298	Stem 2	228.289
	CRR073299	Stem 3	252.180
	CRR073300	Leaf 1	202.753
	CRR073301	Leaf 2	205.946
	CRR073302	Leaf 3	215.596
	CRR073303	Juvenile bud 1	241.027
	CRR073304	Juvenile bud 2	196.875
	CRR073305	Juvenile bud 3	212.649
	CRR073306	Third green 1	221.156
	CRR073307	Third green 2	108.383
	CRR073308	Third green 3	155.508
	CRR073309	Second white 1	418.193
	CRR073310	Second white 2	390.229
	CRR073311	Second white 3	492.714
	CRR073312	Silver flowering 1	376.985
	CRR073313	Silver flowering 2	314.279
	CRR073314	Silver flowering 3	339.108
	CRR073315	Gold flowering 1	449.788
	CRR073316	Gold flowering 2	603.110
	CRR073317	Gold flowering 3	408.259
	CRR073318	Tawny withering 1	114.615
	CRR073319	Tawny withering 2	99.297
	CRR073320	Tawny withering 3	111.666