Detail information of GWHGAAZE029597


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011087655.17.0012E-105PREDICTED: ras-related protein RABA2a-like [Sesamum indicum]
COGYP_002463522.11E-11small GTP-binding protein
Swissprottr|O04486|RAA2A_ARATH1E-94Ras-related protein RABA2a (Precursor)
trEMBLtr|A0A061DWD1|A0A061DWD1_THECC2E-104RAB GTPase 11C {ECO:0000313|EMBL:EOX97005.1}
TAIR10AT1G09630.13E-75RAB GTPase 11C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2970506829705562-
GWHAAZE00000009mRNA2970506829705562-
GWHAAZE00000009exon2970506829705562-
GWHAAZE00000009CDS2970506829705562-
Transcript Sequence

Network for GWHGAAZE029597

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras31234.70E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf147.395
SRR3591706second leaf60.480
SRR3591707mature leaf31.052
SRR3591708Shoot apex75.457
SRR3591709Stem91.549
SRR3591710White floral bud80.319
SRR3591711White flower76.574
SRR3591712Green floral bud106.883
SRR3591713Yellow flower67.746
SRP173429 SRR8316895Juvenile bud stage 53.428
SRR8316896Juvenile bud stage 67.715
SRR8316897Juvenile bud stage 41.792
SRR8316894Third green stage 33.551
SRR8316900Third green stage 114.322
SRR8316901Third green stage 103.006
SRR8316898Complete white stage 46.745
SRR8316899Complete white stage 107.072
SRR8316903Complete white stage 67.940
SRR8316902Silver flowering stage45.651
SRR8316904Silver flowering stage56.739
SRR8316905Silver flowering stage35.828
SRR8316906Gold flowering stage 76.305
SRR8316907Gold flowering stage 79.776
SRR8316908Gold flowering stage 70.465
SRP132670SRR6706286Control138.524
SRR6706287Light intensity 50%141.613
SRR6706288Light intensity 20%161.719
CNP0000432CNS0095592Slightly white alabastrum(diploid) 188.595
CNS0095593Slightly white alabastrum(diploid) 2113.962
CNS0095594Slightly white alabastrum(diploid) 373.251
CNS0095595Whole white alabastrum(diploid) 284.798
CNS0095596Whole white alabastrum(diploid) 381.259
CNS0095597Whole white alabastrum(diploid) 481.083
CNS0095598Silvery flower (diploied) 145.366
CNS0095599Silvery flower (diploied) 255.703
CNS0095600Silvery flower (diploied) 378.851
CNS0095601Golden flower (diploid) 137.215
CNS0095602Golden flower (diploid) 271.461
CNS0095603Golden flower (diploid) 363.902
CNS0095604Slightly white alabastrum(tetraploid) 183.237
CNS0095605Slightly white alabastrum(tetraploid) 275.674
CNS0095606Slightly white alabastrum(tetraploid) 3123.760
CNS0095607Whole white alabastrum(tetraploid) 160.380
CNS0095608Whole white alabastrum(tetraploid) 262.180
CNS0095609Whole white alabastrum(tetraploid) 388.519
CNS0095610Silvery flower (tetraploid) 182.449
CNS0095611Silvery flower (tetraploid) 265.608
CNS0095612Silvery flower (tetraploid) 386.524
CNS0095613Golden flower (tetraploid) 172.726
CNS0095614Golden flower (tetraploid) 276.090
CNS0095615Golden flower (tetraploid) 343.319
CRA001975CRR073297Stem 190.503
CRR073298Stem 283.421
CRR073299Stem 386.186
CRR073300Leaf 179.608
CRR073301Leaf 2102.877
CRR073302Leaf 398.778
CRR073303Juvenile bud 194.334
CRR073304Juvenile bud 2101.928
CRR073305Juvenile bud 377.092
CRR073306Third green 194.099
CRR073307Third green 2103.741
CRR073308Third green 387.098
CRR073309Second white 151.423
CRR073310Second white 231.193
CRR073311Second white 326.530
CRR073312Silver flowering 132.633
CRR073313Silver flowering 223.801
CRR073314Silver flowering 320.568
CRR073315Gold flowering 156.233
CRR073316Gold flowering 272.598
CRR073317Gold flowering 340.378
CRR073318Tawny withering 1132.850
CRR073319Tawny withering 289.249
CRR073320Tawny withering 3148.179