Gene detail

Detail information of GWHGAAZE029594

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97634.1	0	unnamed protein product [Coffea canephora]
COG	YP_144860.1	6E-10	serine/threonine protein kinase
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|A0A068TNW9\|A0A068TNW9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97634.1}
TAIR10	AT1G57700.1	6E-152	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	29685024	29693132	+
GWHAAZE00000009	mRNA	29685024	29693132	+
GWHAAZE00000009	exon	29685024	29685479	+
GWHAAZE00000009	exon	29686179	29686463	+
GWHAAZE00000009	exon	29686720	29686760	+
GWHAAZE00000009	exon	29688122	29688239	+
GWHAAZE00000009	exon	29689062	29689253	+
GWHAAZE00000009	exon	29689600	29689700	+
GWHAAZE00000009	exon	29690472	29690586	+
GWHAAZE00000009	exon	29691901	29692132	+
GWHAAZE00000009	exon	29692204	29692289	+
GWHAAZE00000009	exon	29692929	29693132	+
GWHAAZE00000009	CDS	29685024	29685479	+
GWHAAZE00000009	CDS	29686179	29686463	+
GWHAAZE00000009	CDS	29686720	29686760	+
GWHAAZE00000009	CDS	29688122	29688239	+
GWHAAZE00000009	CDS	29689062	29689253	+
GWHAAZE00000009	CDS	29689600	29689700	+
GWHAAZE00000009	CDS	29690472	29690586	+
GWHAAZE00000009	CDS	29691901	29692132	+
GWHAAZE00000009	CDS	29692204	29692289	+
GWHAAZE00000009	CDS	29692929	29693132	+

Transcript Sequence
>GWHTAAZE029628 ATGGGGTGCATTTGCTCCAAAGGAACTTCTGTAAATGAGGACAGTGAGAATCTTCGTGTTAAAGGGAAAGAACCGAGGAGATCATCGAAGCGGTTGGTTGGGTCATCTAGAAGGGAGGAAGTGGCGGTGGAGGTCGATGGTAGTGCCAATGATGTGACCACTCGGCTTATATCCACGGCTGAGGTCACGGATGAGAATGCAGGCTCCACCGCGACAGCATGGGATGAGGAGGATGAGGAAGAGGAGAAGACTATTGTTTCTGAGAAACATATTATACAAAAACACGATTCAAATGATGTTGGGAAACCTCAGATATCTCGGTCGTTTAGTGTTCGTAATGGCATTGATGGAGCTCAAGTTGCTGCTGGTTGGCCTTCTTGGTTGACTGCAGTGGCAGGGGAAGCTATCAAAGGTTGGGTACCTCGAAAGGCCGAATCTTTTGAGAAGTTGGACAAGATTGGACAAGGGACTTACAGCAGCGTGTATAAAGCCCGTGACAAGGAAACTGGAAAAATTGTTGCACTGAAGAAGGTGCGGTTCGTTAATATGGACCCAGAAAGCGTTCGTTTTATGGCGAGAGAAATCCTTATCCTACGCAGGCTGGACCACCCAAATGTAATGAAGCTTGAAGGTCTAGTCACTTCAAGGGTGTCGGGTAATTTATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGGCTTGCAGCTTCACCAAAGATTAAGTTTACCGAACCACAGTCAAACTTAATAGCAGATTTCTCATCACATATCTTTGCACGACCTCCTGAGCTTTTGCTTGGTGCTACTGATTATGGAGTAGGTGTTGACATGTGGAGTGTTGGTTGCATCCTTGCAGAGCTTTATGCAGGGAAGCCCATAATGCCTGGACGAACAGAGGTGGAACAACTTCACAAAATTTTCAAACTTTGTGGTTCACCATCCGAAGAGTACTGGAAAAAATCGAAATTGCCGCATGCTACTATTTTCAAACCTCAACATTCTTACAAGCGTTGTGTTGCCGAAACATTGAAGGGATTACCTTCTTCGGCTTTATCACTTTTGGATACCCTCCTTGCAATTGAACCTGAGTTCTTCACAAAGAAGCCCCTTCCTTGTGAGCCATCAAGTTTGCCAAAGTACCCACCAAGCAAGGAATTTGATGTCAAAATTCGAGAGGAGGAAGCAAGAAGGCAAAAGGCAGCTGCTGGTAAAGGACATCAAAACGGATCTCACGGAAAAGGTACCAGAGAATCCAAAGCTGTGCCGGCACCTGATGCTAATGCAGAGTTGCAATCATCAATACAGAAGCGACAAGGGCATTCAAACCCTAAAAGCAGCAGCGAGAAATTCAATCCCGAAGAAGATGGTGGCTCTGGCTTCCCCCTCGGGCCTTCTAAGGGATTGCTACAAAATGGTGTTGTTCATGGCCGATCAGGTCAACCCGTTAACATGAATGGAAATGGGGCGGAATTGATGGGCTGGAGAGCGTATAATAAATCAGTGATTCATGGGGGCAGTTCTCGGTTTGACCATCTTGATGGCGAGTCCTCTCACTCTTTGCTCGATAGAGCTAAGTCTACTTACAAGCAAAATGGACATTCACCTGGGAAGGAGTCACTAATGGGTCATGGTTCAAAGAAGAATAGGTTCAACTACTCGGGACCGTTGATTCCCGACGGAAACATGGACGAAATGCTCAAAGAGCATGAGAAACGAATCCAGCATGCTGTCCGTAAAGCTCGCCTTGACAAGTCCAAGACCAAAAAGAACTACGGTGACAACGGGCAAACAGAATCACTTTTGGGCCGTGGTGTAAATGTACGGTAG

Network for GWHGAAZE029594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	147	248	1.10E-18
PF00069.26	Pkinase	261	363	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.419
	SRR3591706	second leaf	5.810
	SRR3591707	mature leaf	5.413
	SRR3591708	Shoot apex	8.201
	SRR3591709	Stem	12.039
	SRR3591710	White floral bud	50.091
	SRR3591711	White flower	19.235
	SRR3591712	Green floral bud	29.471
	SRR3591713	Yellow flower	42.310
SRP173429	SRR8316895	Juvenile bud stage	7.362
	SRR8316896	Juvenile bud stage	13.874
	SRR8316897	Juvenile bud stage	5.865
	SRR8316894	Third green stage	4.945
	SRR8316900	Third green stage	13.433
	SRR8316901	Third green stage	13.557
	SRR8316898	Complete white stage	10.392
	SRR8316899	Complete white stage	10.009
	SRR8316903	Complete white stage	15.571
	SRR8316902	Silver flowering stage	6.776
	SRR8316904	Silver flowering stage	9.288
	SRR8316905	Silver flowering stage	4.316
	SRR8316906	Gold flowering stage	11.178
	SRR8316907	Gold flowering stage	13.227
	SRR8316908	Gold flowering stage	11.570
SRP132670	SRR6706286	Control	12.343
	SRR6706287	Light intensity 50%	14.259
	SRR6706288	Light intensity 20%	12.182
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.320
	CNS0095593	Slightly white alabastrum(diploid) 2	7.017
	CNS0095594	Slightly white alabastrum(diploid) 3	9.204
	CNS0095595	Whole white alabastrum(diploid) 2	9.773
	CNS0095596	Whole white alabastrum(diploid) 3	11.721
	CNS0095597	Whole white alabastrum(diploid) 4	14.420
	CNS0095598	Silvery flower (diploied) 1	4.450
	CNS0095599	Silvery flower (diploied) 2	6.457
	CNS0095600	Silvery flower (diploied) 3	12.774
	CNS0095601	Golden flower (diploid) 1	4.155
	CNS0095602	Golden flower (diploid) 2	10.887
	CNS0095603	Golden flower (diploid) 3	11.267
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.492
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.543
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.259
	CNS0095610	Silvery flower (tetraploid) 1	7.981
	CNS0095611	Silvery flower (tetraploid) 2	8.414
	CNS0095612	Silvery flower (tetraploid) 3	22.992
	CNS0095613	Golden flower (tetraploid) 1	14.501
	CNS0095614	Golden flower (tetraploid) 2	8.647
	CNS0095615	Golden flower (tetraploid) 3	13.085
CRA001975	CRR073297	Stem 1	14.965
	CRR073298	Stem 2	12.241
	CRR073299	Stem 3	12.181
	CRR073300	Leaf 1	13.170
	CRR073301	Leaf 2	11.458
	CRR073302	Leaf 3	8.586
	CRR073303	Juvenile bud 1	10.282
	CRR073304	Juvenile bud 2	9.787
	CRR073305	Juvenile bud 3	8.114
	CRR073306	Third green 1	13.569
	CRR073307	Third green 2	11.179
	CRR073308	Third green 3	13.820
	CRR073309	Second white 1	6.625
	CRR073310	Second white 2	9.048
	CRR073311	Second white 3	7.983
	CRR073312	Silver flowering 1	14.364
	CRR073313	Silver flowering 2	12.879
	CRR073314	Silver flowering 3	13.845
	CRR073315	Gold flowering 1	3.698
	CRR073316	Gold flowering 2	3.411
	CRR073317	Gold flowering 3	2.102
	CRR073318	Tawny withering 1	7.276
	CRR073319	Tawny withering 2	6.817
	CRR073320	Tawny withering 3	5.344