Gene detail

Detail information of GWHGAAZE029552

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007225153.1	hypothetical protein PRUPE_ppa002394mg [Prunus persica]
Swissprot	tr\|Q8L7G0\|ARFA_ARATH	Auxin response factor 1
trEMBL	tr\|M5XJV3\|M5XJV3_PRUPE	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G59750.4	auxin response factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	28108481	28115301	+
GWHAAZE00000009	mRNA	28108481	28115301	+
GWHAAZE00000009	exon	28108481	28108568	+
GWHAAZE00000009	exon	28108860	28108975	+
GWHAAZE00000009	exon	28109413	28109508	+
GWHAAZE00000009	exon	28109637	28109693	+
GWHAAZE00000009	exon	28109884	28110036	+
GWHAAZE00000009	exon	28110178	28110262	+
GWHAAZE00000009	exon	28110626	28110641	+
GWHAAZE00000009	exon	28111049	28111213	+
GWHAAZE00000009	exon	28111799	28111918	+
GWHAAZE00000009	exon	28112003	28112078	+
GWHAAZE00000009	exon	28112720	28112885	+
GWHAAZE00000009	exon	28112952	28113430	+
GWHAAZE00000009	exon	28113691	28113881	+
GWHAAZE00000009	exon	28115130	28115301	+
GWHAAZE00000009	CDS	28108481	28108568	+
GWHAAZE00000009	CDS	28108860	28108975	+
GWHAAZE00000009	CDS	28109413	28109508	+
GWHAAZE00000009	CDS	28109637	28109693	+
GWHAAZE00000009	CDS	28109884	28110036	+
GWHAAZE00000009	CDS	28110178	28110262	+
GWHAAZE00000009	CDS	28110626	28110641	+
GWHAAZE00000009	CDS	28111049	28111213	+
GWHAAZE00000009	CDS	28111799	28111918	+
GWHAAZE00000009	CDS	28112003	28112078	+
GWHAAZE00000009	CDS	28112720	28112885	+
GWHAAZE00000009	CDS	28112952	28113430	+
GWHAAZE00000009	CDS	28113691	28113881	+
GWHAAZE00000009	CDS	28115130	28115301	+

Transcript Sequence
>GWHTAAZE029586 ATGGTGCTGATTGAATCACTACTACCTCATGTTTACCCATTCCTTGCTCATATGGTGTCAAGCTATGGTCATGCTCCTTTGTCCCCGAGAGCGTCAGGTGATGCTTTCTACAAGGAACTTTGGCATGCCTGTGCTGGACCCCTTGTGAATGTTCCTCGTGAAGGGGAACGGGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAAGCATCGATGCATCAGGGTTTAGACCAACAGCTTCCTTCATTCAATTTACCTGCAAAAATACTATGCAAAGTGATGAATGTTCAGCTACGAGCTGAACCAGAAACGGATGAAGTTTATGCACAGATAACTCTGCTACCTGAATCAGATCAAAGTGAGGTCACTAGCCCAGATCCTCCCCTCCCAGAACCTCAAAGGTGCAATGTTCATTCATTTTGCAAGACACTTACAGCATCCGACACAAGCACACATGGGGGATTCTCTGTTCTTCGCAGGCATGCGGATGATTGTTTGCCTCCACTGGATATGTCTCAACAGCCACCCTGGCAAGAATTGGTTGCGACTGATCTCCATGGCAGTGAATGGCATTTTCGGCACATCTTTAGAGCTGTGGTAACTGCGAGGGGTGAAAACGGGGAGCTTCGCGTTGGAGTAAGAAGGCTAATGAGACAACTAAACAATATGCCGTCTTCTGTCATATCTAGTCACAGCATGCATCTTGGTGTTCTTGCTACTGCATCTCATGCAATTGCGACTGGAACCCTCTTCTCAGTTTTCTATAAACCAAGAACAAGTCAATCTGAGTTCATCGTAAGCCTTAACAAGTACCTCGAAGCTCGGAGTGAGAAGCTTTCGGTTGGGATGAGGTTTAAGATGAGATTTGAGGGCGAGGAAGTTCCTGAAAGAAGGTTTAGTGGAACTATTGTTGGTCTCGGAGATAATGCACTGTCAAAATGGGTTGATTCTGAATGGAGATCCTTAAAGGTTCAATGGGATGAACCTTCATCAATTCCACGACCAGAAAGAGTTTCTCCATGGGAATTAGAGCCCCTTTTGCCAGCAGCACCTTCCAACTCCACACCTCCACAAAGAAACAAGCGGGCCCGGCCTCAAGTTTTACCTTCACTAGCACCAGATCTTTCTGCTTTTGGAATGTGGAAATCCCCTGTGGACCGCCCAACAGCTTTCTCATATTGTGACCCAGCACGTGGACGGGACCTTTATCCGTCACCTAAACTCTCTTCTTGTACGAAGGGCAGCACCCTGAGCTACAACGAGAACAGTTCCTTCCCTCCAACATTTTGGTCAAACCAAGTGGAATCCATGACCGAGTCATTTGCACCTGTTCTTAATCGAGAAACTGGTGAAAAGAGACAAATCGGTGGCTACAGGCTGTTTGGTATTGAGCTACTCAACCATTCTACTGTTGAGGAACCTTCACCAATGGTTTTGAATGGAGAAGCGATGGAGGATCAGCCAGTTGCATCGTTAGATGCTGAATCTGATCGGCATTCTGAACCATCAAATATTAATCGATCCGGTGTTCCTTCAGTAAGTTGTGAGCCTGAAAAATCGTGCCTAAGATCCCCTCTGGACTCCCAAAGCAGGCAAATTCGTAGCTGCACTAAGGTTCACATGCAAGGGATTGCTGTTGGGAGGGCAGTAGATTTAACAAGGTTTAATGGGTATGGGGACCTGCTCAAAAAACTTGAAGAGATGTTTGAAATTGAAGGTGAACTTAGTGGACCAACAAAGAAATGGAAGGTTGTCTACACTGACGATGAGGATGACATGATGATGGTCGGGGATGATCCTTGGCGTGAGTTCTGCAGCATGGTGAGGAAGATATTCATCTACACCACAGAAGAAGCCAAGAACCTCTCCCCCAAAATAAAACTGGTGCTTGATGATGAAACCAGACCACCGAAACCTGTTCCCAACGCTGATATTAGCACCGAAGAACAATCATCAAACTTAGGATCCGGTTGCTAA

Network for GWHGAAZE029552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06507.14	Auxin_resp	242	324	4.30E-33
PF02309.17	AUX_IAA	535	626	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.771
	SRR3591706	second leaf	55.128
	SRR3591707	mature leaf	29.465
	SRR3591708	Shoot apex	113.916
	SRR3591709	Stem	92.556
	SRR3591710	White floral bud	38.902
	SRR3591711	White flower	59.339
	SRR3591712	Green floral bud	42.375
	SRR3591713	Yellow flower	39.389
SRP173429	SRR8316895	Juvenile bud stage	54.715
	SRR8316896	Juvenile bud stage	62.523
	SRR8316897	Juvenile bud stage	33.880
	SRR8316894	Third green stage	26.175
	SRR8316900	Third green stage	45.451
	SRR8316901	Third green stage	45.096
	SRR8316898	Complete white stage	9.728
	SRR8316899	Complete white stage	54.828
	SRR8316903	Complete white stage	21.962
	SRR8316902	Silver flowering stage	11.054
	SRR8316904	Silver flowering stage	12.644
	SRR8316905	Silver flowering stage	5.185
	SRR8316906	Gold flowering stage	19.048
	SRR8316907	Gold flowering stage	25.448
	SRR8316908	Gold flowering stage	19.221
SRP132670	SRR6706286	Control	46.410
	SRR6706287	Light intensity 50%	45.888
	SRR6706288	Light intensity 20%	49.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.977
	CNS0095593	Slightly white alabastrum(diploid) 2	41.943
	CNS0095594	Slightly white alabastrum(diploid) 3	36.055
	CNS0095595	Whole white alabastrum(diploid) 2	31.831
	CNS0095596	Whole white alabastrum(diploid) 3	23.632
	CNS0095597	Whole white alabastrum(diploid) 4	31.929
	CNS0095598	Silvery flower (diploied) 1	58.986
	CNS0095599	Silvery flower (diploied) 2	49.499
	CNS0095600	Silvery flower (diploied) 3	30.723
	CNS0095601	Golden flower (diploid) 1	42.616
	CNS0095602	Golden flower (diploid) 2	41.981
	CNS0095603	Golden flower (diploid) 3	39.443
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.419
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.646
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.827
	CNS0095610	Silvery flower (tetraploid) 1	39.708
	CNS0095611	Silvery flower (tetraploid) 2	38.357
	CNS0095612	Silvery flower (tetraploid) 3	22.646
	CNS0095613	Golden flower (tetraploid) 1	15.730
	CNS0095614	Golden flower (tetraploid) 2	29.410
	CNS0095615	Golden flower (tetraploid) 3	15.964
CRA001975	CRR073297	Stem 1	97.136
	CRR073298	Stem 2	84.535
	CRR073299	Stem 3	57.191
	CRR073300	Leaf 1	72.813
	CRR073301	Leaf 2	76.704
	CRR073302	Leaf 3	46.127
	CRR073303	Juvenile bud 1	54.882
	CRR073304	Juvenile bud 2	27.666
	CRR073305	Juvenile bud 3	69.729
	CRR073306	Third green 1	16.899
	CRR073307	Third green 2	16.047
	CRR073308	Third green 3	16.341
	CRR073309	Second white 1	21.121
	CRR073310	Second white 2	16.919
	CRR073311	Second white 3	20.550
	CRR073312	Silver flowering 1	23.450
	CRR073313	Silver flowering 2	20.307
	CRR073314	Silver flowering 3	22.918
	CRR073315	Gold flowering 1	11.939
	CRR073316	Gold flowering 2	19.236
	CRR073317	Gold flowering 3	14.226
	CRR073318	Tawny withering 1	55.112
	CRR073319	Tawny withering 2	51.282
	CRR073320	Tawny withering 3	50.670