Gene detail

Detail information of GWHGAAZE029533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657908.1	0	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1 [Vitis vinifera]
COG	YP_673731.1	7E-130	ATP-dependent protease ATP-binding subunit ClpX
Swissprot	tr\|Q39444\|FTSH_CAPAN	0.000002	ATP-dependent zinc metalloprotease FTSH, chloroplastic (Precursor; Fragment)
trEMBL	tr\|F6HJZ7\|F6HJZ7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55000.1}
TAIR10	AT5G49840.1	0	ATP-dependent Clp protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	25900941	25930911	+
GWHAAZE00000009	mRNA	25900941	25930911	+
GWHAAZE00000009	exon	25900941	25901501	+
GWHAAZE00000009	exon	25901616	25901669	+
GWHAAZE00000009	exon	25902819	25902880	+
GWHAAZE00000009	exon	25904306	25904406	+
GWHAAZE00000009	exon	25904557	25904640	+
GWHAAZE00000009	exon	25905133	25905179	+
GWHAAZE00000009	exon	25905930	25906004	+
GWHAAZE00000009	exon	25906106	25906183	+
GWHAAZE00000009	exon	25906389	25906445	+
GWHAAZE00000009	exon	25907151	25907221	+
GWHAAZE00000009	exon	25907317	25907416	+
GWHAAZE00000009	exon	25907581	25907685	+
GWHAAZE00000009	exon	25908129	25908191	+
GWHAAZE00000009	exon	25908297	25908419	+
GWHAAZE00000009	exon	25909120	25909278	+
GWHAAZE00000009	exon	25909542	25909592	+
GWHAAZE00000009	exon	25916187	25916255	+
GWHAAZE00000009	exon	25917538	25917666	+
GWHAAZE00000009	exon	25923160	25923242	+
GWHAAZE00000009	exon	25923351	25923426	+
GWHAAZE00000009	exon	25928935	25929129	+
GWHAAZE00000009	exon	25929860	25929988	+
GWHAAZE00000009	exon	25930481	25930911	+
GWHAAZE00000009	CDS	25900941	25901501	+
GWHAAZE00000009	CDS	25901616	25901669	+
GWHAAZE00000009	CDS	25902819	25902880	+
GWHAAZE00000009	CDS	25904306	25904406	+
GWHAAZE00000009	CDS	25904557	25904640	+
GWHAAZE00000009	CDS	25905133	25905179	+
GWHAAZE00000009	CDS	25905930	25906004	+
GWHAAZE00000009	CDS	25906106	25906183	+
GWHAAZE00000009	CDS	25906389	25906445	+
GWHAAZE00000009	CDS	25907151	25907221	+
GWHAAZE00000009	CDS	25907317	25907416	+
GWHAAZE00000009	CDS	25907581	25907685	+
GWHAAZE00000009	CDS	25908129	25908191	+
GWHAAZE00000009	CDS	25908297	25908419	+
GWHAAZE00000009	CDS	25909120	25909278	+
GWHAAZE00000009	CDS	25909542	25909592	+
GWHAAZE00000009	CDS	25916187	25916255	+
GWHAAZE00000009	CDS	25917538	25917666	+
GWHAAZE00000009	CDS	25923160	25923242	+
GWHAAZE00000009	CDS	25923351	25923426	+
GWHAAZE00000009	CDS	25928935	25929129	+
GWHAAZE00000009	CDS	25929860	25929988	+
GWHAAZE00000009	CDS	25930481	25930645	+
GWHAAZE00000009	three_prime_UTR	25930646	25930911	+

Transcript Sequence
>GWHTAAZE029567 ATGTCTGCCATTTTATTATTAAGAAGATACAAATCAAAGCTCAAACACATAATCACAGCAATCCCCAAACCTCTCTCTTTATCCCATCATCATCATTCTCTCCTCAAAGTCCCCTCCCAACCTTCATTTCTAGGGTTAGGGTTTCAGAATCGCCACAAATGGGAAGGAAGTTCCGATAAGTACGACCAAATCCGTGCACAAGTGAATTGCCCTAGATGTTCCAAGCTAATGAACGTACTCTTCTCGAACCGGCCCTTGTCAATTACCGGAGGCGAGACCGGTATTTACCAAGCCCTAAATATCTGCCCTAGCTGTAGGACTGCGTTCTATTTTAGGCCTTTTAAGCTTGTTCCGTTGCAAGGGAGTTTTGTTGAGATTGGTAGGGTCAAAGGGGATGATGGGAATGGTGGGGAAGGGAATGGGAGGGTTAGGGTTAAGATTTGGGAGAAGTTGAGGTCCTATGGCGGTGATACGGCGGAGAGTATGAGTTTTAATGCGAATTCGTCAGATTCGGATAGTAAGAATGGTGGTGATGAGTGCACGGTGGGGCCGACGGATGTGGAGATATGCAAAGGACTTGATGAATTTGTTATTGGGCAGGAAAAGGCTAAAAAGGTGCTTTCTGTTGCAGTTTACAACCATTACAAAAGGATATATCACACCTCCTCGCATAAAGAGTCAGCTGCAGCGTTCAACAAAGACGGAGTTGATAATAATGATGGTGATTATGTTGAGCTGGACAAGAGCAATGTGTTGTTACTTGGTCCAACTGGCTCAGGGAAGACGTTGCTTGCAAAAACACTAGCTCGTGTGGTGAATGTGCCGTTTGTCATTGCTGATGCGACGACATTAACTCAGGCAGGTTATGTTGGAGAAGACGTGGAATCTATATTGCACAAACTACTTACGGTTGCTGATTTCAACGTGGAGGCAGCTCAGCGAGGGATTGTGTACATCGATGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCCTAAACGGTGGTAGAGATGTATCTGGAGAGGGTGTTCAACAGGCGCTGCTGAAAATGCTGGAAGGAACTGTTGTGAATGTTCCGGATAATAGAGCTCGAAAGCATCCTCGTGGGGATAGCATTCAGATAGATACAAAAGATATCCTTTTTATATGCGGTGGAGCCTTTGTTGATTTGGAGAAGACCATTTCTGAGAGACGACAAGATTCATCCATTGGTTTTGGAGCACCAGTTCGTGCTAATATGAGAGTTGGTGGACTAACTAATGCTGTGGTGACATCATCTTTGTTGGAATCTGCGGAAAGTGGGGATCTTATTGCATATGGCCTAATACCTGAATTTATCGGGCGGTTTCCTATCCTAGTCAGTTTATCTGCTCTAGATGAGGACCAACTTGTTCAGGTCCTTACAGAACCTAAAAATGCTCTTGGTAAACAATACAAGAGAATGTTCAGCATGAACAATGTCAAGTTATATTTTACAGATAATGCACTGAGATTGATAGCAAGGAAAGCAATAGCAAAGAACACTGGCGCACGAGGTTTAAGAGCTATATTAGAAAGTATTCTAACAGAACCCATGTTTGAGATTCCAGATGTCAAGATAGGAGATGATTGTATAGATGCAGTTTTGGTTGATGAAGAAGCTGTGGGATCGGTTGACACACCGGGACTTGGGGCGAAAATTCTACGTGGAGTTGGTGCTTTGGAACGATACTTTCATCAAAGAAAGCCACAAGATCCAACGGGAAAAGATGAGATGACCAAGGATGCGGCGGAGGGAGATTCAGAGGTTTCAGTTAGGAAGCTTTTGGATGATGACCCAGGAAACTCTGAATATGCAGACATGGAAAAGGAGCTCGCTGAGGTGATCGCTTTGACAGAAGAGCTCCTCGAAACCGCAAAGGAAAATGAAAAATCTGGATTTGATATTGGGGCAAGTCCTGAAATATCTCCGACTTTGAGGCATTCAGGGGATACCTATCAGCATAATATGGAATCAAGTACAATGTACGATCATTCTGACAAGCTTCCTGTTGGTGCTAAAGTTCAAGCTGTCTGGAGTGATGATGGAGAGTGGTATGATGCAACAATCGAGGCACACACACCGAATGGATATTTTGTGAGCTATGATGAGTGGGGCAACAAGGAGGAGGTGGATCCTGCTAATGTAAGGCCAATACAAGAAGAGGAGGCTGTCGATGCTCTGGTAGAAGCTGAGAAGGAAGCTGAGGCTACAAAGCAAGCTCTCAAGCGTAAGATTGCGCAAGCTGCTAATGCAGATGCCGACTTCCAGTCCCGAAGTTTACCTGCAAAGCTTCGCATTGAACCCGATGACCCCGAAGATGTGAAAGCCGCCAAACGTAAGAAAATACATTCTTTTAAGTCGAAGATGCGGAAGGAGCAACTTGAGGTGACCCAGAATAAGAGGCAGAATGCTTGGCAGCAATTCCAGACCACCAAAGGGCGGGCTAAGAAGGTTGGTTTCTTCTCTGGGAGGAAAAAGGAGAGCATCTTCAAATCTCCGGATGATCCGTTTGGGAAGGTAGGAGTGACCGGAAGTGGGAAAGGTCTGACAGAGTTTCAGAAAAGAGAAAAGCACTTGCATCTCAAAGGTGCCAACGGCGAAAACGCTGATGATTAGATCGATAGATGAATTTTACTCATACCTTTATTTCTTCTTCATCTCTGTATCTGTTTCTCATCAGTTTAAACGTTGGCCAACCAGTTTGATGTAGTCTTCTAGCATTAAGGCAAAGTCCATGGTGCAGTGTTTTGTTGGCTAATGTTAGATAACTTAGAATGGAGGTTTGAATCTTAGATCGCTGTTAATTTTCAACTACAAATTCATGGTTTGGCTATTTTCCTTTTTTGTTGTTGGATCTTGGATGGTTGTGATGTGGTACAATG

Network for GWHGAAZE029533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	248	451	3.70E-43
PF10431.10	ClpB_D2-small	458	527	9.00E-14
PF06003.13	SMN	674	751	4.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03544	clpX, CLPX	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0006457	biological_process	protein folding
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003723	molecular_function	RNA binding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.902
	SRR3591706	second leaf	23.930
	SRR3591707	mature leaf	26.775
	SRR3591708	Shoot apex	32.148
	SRR3591709	Stem	45.968
	SRR3591710	White floral bud	46.887
	SRR3591711	White flower	44.420
	SRR3591712	Green floral bud	41.320
	SRR3591713	Yellow flower	36.815
SRP173429	SRR8316895	Juvenile bud stage	27.251
	SRR8316896	Juvenile bud stage	37.196
	SRR8316897	Juvenile bud stage	18.140
	SRR8316894	Third green stage	18.127
	SRR8316900	Third green stage	47.842
	SRR8316901	Third green stage	47.182
	SRR8316898	Complete white stage	18.052
	SRR8316899	Complete white stage	65.288
	SRR8316903	Complete white stage	33.039
	SRR8316902	Silver flowering stage	17.039
	SRR8316904	Silver flowering stage	23.365
	SRR8316905	Silver flowering stage	10.628
	SRR8316906	Gold flowering stage	36.584
	SRR8316907	Gold flowering stage	35.108
	SRR8316908	Gold flowering stage	43.020
SRP132670	SRR6706286	Control	41.632
	SRR6706287	Light intensity 50%	42.155
	SRR6706288	Light intensity 20%	48.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.962
	CNS0095593	Slightly white alabastrum(diploid) 2	37.652
	CNS0095594	Slightly white alabastrum(diploid) 3	32.733
	CNS0095595	Whole white alabastrum(diploid) 2	29.925
	CNS0095596	Whole white alabastrum(diploid) 3	28.004
	CNS0095597	Whole white alabastrum(diploid) 4	26.978
	CNS0095598	Silvery flower (diploied) 1	40.914
	CNS0095599	Silvery flower (diploied) 2	35.115
	CNS0095600	Silvery flower (diploied) 3	30.409
	CNS0095601	Golden flower (diploid) 1	40.638
	CNS0095602	Golden flower (diploid) 2	29.134
	CNS0095603	Golden flower (diploid) 3	29.139
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.369
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.325
	CNS0095610	Silvery flower (tetraploid) 1	50.391
	CNS0095611	Silvery flower (tetraploid) 2	36.868
	CNS0095612	Silvery flower (tetraploid) 3	37.586
	CNS0095613	Golden flower (tetraploid) 1	40.009
	CNS0095614	Golden flower (tetraploid) 2	47.434
	CNS0095615	Golden flower (tetraploid) 3	35.400
CRA001975	CRR073297	Stem 1	39.697
	CRR073298	Stem 2	35.295
	CRR073299	Stem 3	28.910
	CRR073300	Leaf 1	47.633
	CRR073301	Leaf 2	44.059
	CRR073302	Leaf 3	31.855
	CRR073303	Juvenile bud 1	32.589
	CRR073304	Juvenile bud 2	30.519
	CRR073305	Juvenile bud 3	32.173
	CRR073306	Third green 1	10.772
	CRR073307	Third green 2	9.491
	CRR073308	Third green 3	11.579
	CRR073309	Second white 1	9.579
	CRR073310	Second white 2	16.129
	CRR073311	Second white 3	12.715
	CRR073312	Silver flowering 1	13.271
	CRR073313	Silver flowering 2	11.940
	CRR073314	Silver flowering 3	12.971
	CRR073315	Gold flowering 1	16.643
	CRR073316	Gold flowering 2	21.226
	CRR073317	Gold flowering 3	14.202
	CRR073318	Tawny withering 1	32.656
	CRR073319	Tawny withering 2	43.128
	CRR073320	Tawny withering 3	30.932