Detail information of GWHGAAZE029529


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004236141.12.64064E-83PREDICTED: 22.7 kDa class IV heat shock protein-like [Solanum lycopersicum]
COGYP_007976722.12E-22Small heat shock protein
Swissprottr|P19244|HSP41_PEA2E-5122.7 kDa class IV heat shock protein (Precursor)
trEMBLtr|K4BKP5|K4BKP5_SOLLC1E-83Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g113930.1.1}
TAIR10AT4G10250.13E-34HSP20-like chaperones superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2584324925843704+
GWHAAZE00000009mRNA2584324925843704+
GWHAAZE00000009exon2584324925843704+
GWHAAZE00000009CDS2584324925843704+
Transcript Sequence

Network for GWHGAAZE029529

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20311342.90E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.207
SRR3591706second leaf0.215
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.415
SRR3591709Stem1.028
SRR3591710White floral bud0.479
SRR3591711White flower2.149
SRR3591712Green floral bud1.826
SRR3591713Yellow flower0.306
SRP173429 SRR8316895Juvenile bud stage 4.343
SRR8316896Juvenile bud stage 38.770
SRR8316897Juvenile bud stage 4.498
SRR8316894Third green stage 0.489
SRR8316900Third green stage 3.520
SRR8316901Third green stage 1.569
SRR8316898Complete white stage 1.856
SRR8316899Complete white stage 8.240
SRR8316903Complete white stage 1.176
SRR8316902Silver flowering stage1.047
SRR8316904Silver flowering stage0.501
SRR8316905Silver flowering stage0.312
SRR8316906Gold flowering stage 1.563
SRR8316907Gold flowering stage 3.377
SRR8316908Gold flowering stage 1.186
SRP132670SRR6706286Control9.830
SRR6706287Light intensity 50%5.427
SRR6706288Light intensity 20%6.073
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.786
CNS0095593Slightly white alabastrum(diploid) 25.043
CNS0095594Slightly white alabastrum(diploid) 33.203
CNS0095595Whole white alabastrum(diploid) 22.895
CNS0095596Whole white alabastrum(diploid) 33.734
CNS0095597Whole white alabastrum(diploid) 44.721
CNS0095598Silvery flower (diploied) 11.236
CNS0095599Silvery flower (diploied) 233.720
CNS0095600Silvery flower (diploied) 38.534
CNS0095601Golden flower (diploid) 1114.952
CNS0095602Golden flower (diploid) 28.796
CNS0095603Golden flower (diploid) 39.143
CNS0095604Slightly white alabastrum(tetraploid) 13.693
CNS0095605Slightly white alabastrum(tetraploid) 26.204
CNS0095606Slightly white alabastrum(tetraploid) 31.888
CNS0095607Whole white alabastrum(tetraploid) 12.483
CNS0095608Whole white alabastrum(tetraploid) 25.966
CNS0095609Whole white alabastrum(tetraploid) 32.356
CNS0095610Silvery flower (tetraploid) 121.399
CNS0095611Silvery flower (tetraploid) 25.660
CNS0095612Silvery flower (tetraploid) 35.494
CNS0095613Golden flower (tetraploid) 111.781
CNS0095614Golden flower (tetraploid) 24.090
CNS0095615Golden flower (tetraploid) 30.621
CRA001975CRR073297Stem 12.256
CRR073298Stem 22.205
CRR073299Stem 35.036
CRR073300Leaf 14.668
CRR073301Leaf 25.122
CRR073302Leaf 37.340
CRR073303Juvenile bud 115.817
CRR073304Juvenile bud 28.975
CRR073305Juvenile bud 38.687
CRR073306Third green 14.218
CRR073307Third green 26.564
CRR073308Third green 32.969
CRR073309Second white 11.428
CRR073310Second white 22.331
CRR073311Second white 30.349
CRR073312Silver flowering 10.010
CRR073313Silver flowering 22.633
CRR073314Silver flowering 31.121
CRR073315Gold flowering 13.084
CRR073316Gold flowering 22.751
CRR073317Gold flowering 31.543
CRR073318Tawny withering 119.682
CRR073319Tawny withering 211.157
CRR073320Tawny withering 311.304