Detail information of GWHGAAZE029425


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006392436.10hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
Swissprottr|O81919|CALR_BETVU0Calreticulin (Precursor)
trEMBLtr|V4KII7|V4KII7_EUTSA0Uncharacterized protein {ECO:0000313|EMBL:ESQ29722.1}
TAIR10AT1G09210.15E-128calreticulin 1b

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2207118422074246-
GWHAAZE00000009mRNA2207118422074246-
GWHAAZE00000009exon2207393922074246-
GWHAAZE00000009exon2207320622073464-
GWHAAZE00000009exon2207306622073122-
GWHAAZE00000009exon2207292122072968-
GWHAAZE00000009exon2207241922072505-
GWHAAZE00000009exon2207227522072332-
GWHAAZE00000009exon2207211922072186-
GWHAAZE00000009exon2207194822072043-
GWHAAZE00000009exon2207181422071858-
GWHAAZE00000009exon2207142222071451-
GWHAAZE00000009exon2207118422071273-
GWHAAZE00000009CDS2207393922074246-
GWHAAZE00000009CDS2207320622073464-
GWHAAZE00000009CDS2207306622073122-
GWHAAZE00000009CDS2207292122072968-
GWHAAZE00000009CDS2207241922072505-
GWHAAZE00000009CDS2207227522072332-
GWHAAZE00000009CDS2207211922072186-
GWHAAZE00000009CDS2207194822072043-
GWHAAZE00000009CDS2207181422071858-
GWHAAZE00000009CDS2207142222071451-
GWHAAZE00000009CDS2207118422071273-
Transcript Sequence

Network for GWHGAAZE029425

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00262.19Calreticulin472324.20E-52
PF00262.19Calreticulin2343071.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08057CALR Protein processing in endoplasmic reticulum map04141
Phagosomemap04145
Antigen processing and presentationmap04612

Gene Ontology

GO term OntologyName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
GO:0005509molecular_functioncalcium ion binding
GO:0051082molecular_functionunfolded protein binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.116
SRR3591706second leaf0.414
SRR3591707mature leaf0.410
SRR3591708Shoot apex3.656
SRR3591709Stem0.321
SRR3591710White floral bud9.540
SRR3591711White flower4.743
SRR3591712Green floral bud6.775
SRR3591713Yellow flower27.120
SRP173429 SRR8316895Juvenile bud stage 42.956
SRR8316896Juvenile bud stage 78.954
SRR8316897Juvenile bud stage 20.921
SRR8316894Third green stage 13.807
SRR8316900Third green stage 19.292
SRR8316901Third green stage 32.261
SRR8316898Complete white stage 1.062
SRR8316899Complete white stage 1.527
SRR8316903Complete white stage 0.921
SRR8316902Silver flowering stage3.136
SRR8316904Silver flowering stage3.583
SRR8316905Silver flowering stage3.604
SRR8316906Gold flowering stage 7.429
SRR8316907Gold flowering stage 11.218
SRR8316908Gold flowering stage 5.081
SRP132670SRR6706286Control8.234
SRR6706287Light intensity 50%5.635
SRR6706288Light intensity 20%3.776
CNP0000432CNS0095592Slightly white alabastrum(diploid) 171.766
CNS0095593Slightly white alabastrum(diploid) 239.351
CNS0095594Slightly white alabastrum(diploid) 3102.007
CNS0095595Whole white alabastrum(diploid) 228.208
CNS0095596Whole white alabastrum(diploid) 340.190
CNS0095597Whole white alabastrum(diploid) 412.744
CNS0095598Silvery flower (diploied) 12.467
CNS0095599Silvery flower (diploied) 20.444
CNS0095600Silvery flower (diploied) 31.232
CNS0095601Golden flower (diploid) 11.944
CNS0095602Golden flower (diploid) 217.632
CNS0095603Golden flower (diploid) 317.895
CNS0095604Slightly white alabastrum(tetraploid) 168.046
CNS0095605Slightly white alabastrum(tetraploid) 268.770
CNS0095606Slightly white alabastrum(tetraploid) 34.786
CNS0095607Whole white alabastrum(tetraploid) 124.548
CNS0095608Whole white alabastrum(tetraploid) 213.941
CNS0095609Whole white alabastrum(tetraploid) 328.776
CNS0095610Silvery flower (tetraploid) 18.496
CNS0095611Silvery flower (tetraploid) 25.920
CNS0095612Silvery flower (tetraploid) 314.150
CNS0095613Golden flower (tetraploid) 17.311
CNS0095614Golden flower (tetraploid) 27.270
CNS0095615Golden flower (tetraploid) 323.246
CRA001975CRR073297Stem 142.526
CRR073298Stem 232.025
CRR073299Stem 354.182
CRR073300Leaf 114.560
CRR073301Leaf 216.772
CRR073302Leaf 323.699
CRR073303Juvenile bud 12.196
CRR073304Juvenile bud 22.386
CRR073305Juvenile bud 31.298
CRR073306Third green 14.004
CRR073307Third green 25.802
CRR073308Third green 34.696
CRR073309Second white 118.955
CRR073310Second white 213.533
CRR073311Second white 313.413
CRR073312Silver flowering 168.226
CRR073313Silver flowering 2132.098
CRR073314Silver flowering 386.711
CRR073315Gold flowering 10.122
CRR073316Gold flowering 20.341
CRR073317Gold flowering 30.321
CRR073318Tawny withering 11.080
CRR073319Tawny withering 22.089
CRR073320Tawny withering 30.556