Gene detail

Detail information of GWHGAAZE029394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006594131.1	2.1251E-151	PREDICTED: serine/threonine-protein kinase Aurora-3 isoform X2 [Glycine max]
COG	YP_003108731.1	2E-20	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|O64629\|AUR3_ARATH	2E-140	Serine/threonine-protein kinase Aurora-3
trEMBL	tr\|A0A067JY03\|A0A067JY03_JATCU	3E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDP28732.1}
TAIR10	AT2G45490.1	1E-113	ataurora3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	21009321	21017292	-
GWHAAZE00000009	mRNA	21009321	21017292	-
GWHAAZE00000009	exon	21009321	21009563	-
GWHAAZE00000009	exon	21009926	21009945	-
GWHAAZE00000009	exon	21010062	21010153	-
GWHAAZE00000009	exon	21013212	21013458	-
GWHAAZE00000009	exon	21014484	21014568	-
GWHAAZE00000009	exon	21014676	21014748	-
GWHAAZE00000009	exon	21014839	21015053	-
GWHAAZE00000009	exon	21016594	21016836	-
GWHAAZE00000009	exon	21017111	21017292	-
GWHAAZE00000009	five_prime_UTR	21017231	21017292	-
GWHAAZE00000009	CDS	21017111	21017230	-
GWHAAZE00000009	CDS	21016594	21016836	-
GWHAAZE00000009	CDS	21014839	21015053	-
GWHAAZE00000009	CDS	21014676	21014748	-
GWHAAZE00000009	CDS	21014484	21014568	-
GWHAAZE00000009	CDS	21013212	21013458	-
GWHAAZE00000009	CDS	21010062	21010153	-
GWHAAZE00000009	CDS	21009926	21009945	-
GWHAAZE00000009	CDS	21009321	21009563	-

Transcript Sequence
>GWHTAAZE029428 TTCCTTCTAAATCTGAATCAGAAAACCCCCAATTCGTTCTCCTACATTCCCAAATCACAAAAATGGCGTCCAAAACTGAAAAACAAAACCCTAAAAAACAATGGTCCTTAGAAGACTTCGAGATCGGAAAGCCCCTCGGCAAGGGCAAATTCGGACGCGTCTACCTCGCCCGTGAAATCAAGAGCCAGTACATTGTGGCATTGAAGGTGATATTCAAAGAACAAATAGAGAAGTACAGATTGCACCACCAGCTTAAAAGAGAGATGGAGATCCAAACTAGTCTTCGTCACCCTAACGTTCTCAGGCTCTTTGGTTGGTTTCATGATGATGAGAGAATTTACTTGATCTTGGAGTATGCTCATGGTGGTGAGCTTTATAGACAGCTCCGCAAAACCGGTCATCTTGGCGAGAAACAAGCTGCCACTGGTGTATTGAAGATTGCGGATTTTGGATGGTCGGTCCAATCGAGAAGCAAGAGACACACCATGTGTGGAACTTTGGACTATTTAGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATGCTGTTGATAATTGGACATTGGGTATCCTTTGTTATGAGTTTTTGTATGGCAGCCCTCCATTCGAGGCAGAGAGCCAAGTAGATACGTTCAAAAGGATTATGAAGATTGACCTGAATTTCCCTTCCACCCATCAAGTTTCTGCAGAGGCTAAAAATCTCATTACTCGGCTTCTAGTGAAGGACTCTTCTAAACGGCTCTCTCTTAGGAAGATAATTGAGCACCCTTGGATTATCAAGAATGCTGATCCCACAATAATCTATGTATTAATTTTTATTTGGGTGGAAAGTGATGGTATATCTGCTGGTGGAACTCCGGTGTCGAATGAATGGACTGCCTATAAGCTGAAGGGATACTTCGATTTGGCCAAAGAAGTGATCGCCAAGGCTGTTAGGGCTGAGGAGTGGGGATTGGTTGACGATGCCATTTCGCACTATCAGAATGCTCAACGGATTCTGGCTGAAGCCATTTCCACGCCGGTACCTTCGTATATCACCCCTAGTGAACTAGAGAAAGTGAGATCGTATCGTCAGAAGATATCAAAATGGCAGGGTCAAGTTTCAGACAGACTACAAGCTTTAAGCCGCCGAACAGGTTGCACGTCTGTAAACAAGAACATCTTACCCAAGGCACACACTGCAGCAGTTTTGCCAACAATGCCTAATACTAGAAAACAGGCAGTACAAAAGTTTTCTGGTCCCAGTGGAAGGGGCTCTGTTGTGAGGAGCCAGTCTAACAAAGTCGTAAGCTCAAAACCTACACAAGAATCTAGCACTGGTGGTGAAAAGCTGGTTGAAATGATAAATTCTGTGATCGTGGACAGAAGTCCTTCTGTCAAATGGGAAGATATCGGTTAG

Network for GWHGAAZE029394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	19	120	2.50E-21
PF00069.26	Pkinase	121	238	1.40E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Aur

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.576
	SRR3591706	second leaf	7.529
	SRR3591707	mature leaf	8.064
	SRR3591708	Shoot apex	8.924
	SRR3591709	Stem	10.219
	SRR3591710	White floral bud	12.343
	SRR3591711	White flower	11.165
	SRR3591712	Green floral bud	11.766
	SRR3591713	Yellow flower	10.421
SRP173429	SRR8316895	Juvenile bud stage	7.587
	SRR8316896	Juvenile bud stage	8.301
	SRR8316897	Juvenile bud stage	5.849
	SRR8316894	Third green stage	4.134
	SRR8316900	Third green stage	9.455
	SRR8316901	Third green stage	9.646
	SRR8316898	Complete white stage	2.060
	SRR8316899	Complete white stage	9.356
	SRR8316903	Complete white stage	7.177
	SRR8316902	Silver flowering stage	3.398
	SRR8316904	Silver flowering stage	5.638
	SRR8316905	Silver flowering stage	2.434
	SRR8316906	Gold flowering stage	6.002
	SRR8316907	Gold flowering stage	7.498
	SRR8316908	Gold flowering stage	7.814
SRP132670	SRR6706286	Control	5.608
	SRR6706287	Light intensity 50%	6.160
	SRR6706288	Light intensity 20%	6.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.543
	CNS0095593	Slightly white alabastrum(diploid) 2	9.019
	CNS0095594	Slightly white alabastrum(diploid) 3	5.388
	CNS0095595	Whole white alabastrum(diploid) 2	7.482
	CNS0095596	Whole white alabastrum(diploid) 3	5.314
	CNS0095597	Whole white alabastrum(diploid) 4	6.919
	CNS0095598	Silvery flower (diploied) 1	9.994
	CNS0095599	Silvery flower (diploied) 2	7.900
	CNS0095600	Silvery flower (diploied) 3	8.119
	CNS0095601	Golden flower (diploid) 1	5.871
	CNS0095602	Golden flower (diploid) 2	7.125
	CNS0095603	Golden flower (diploid) 3	7.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.579
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.024
	CNS0095610	Silvery flower (tetraploid) 1	8.561
	CNS0095611	Silvery flower (tetraploid) 2	10.561
	CNS0095612	Silvery flower (tetraploid) 3	11.052
	CNS0095613	Golden flower (tetraploid) 1	7.796
	CNS0095614	Golden flower (tetraploid) 2	9.310
	CNS0095615	Golden flower (tetraploid) 3	8.905
CRA001975	CRR073297	Stem 1	12.964
	CRR073298	Stem 2	9.297
	CRR073299	Stem 3	5.266
	CRR073300	Leaf 1	10.758
	CRR073301	Leaf 2	9.789
	CRR073302	Leaf 3	4.958
	CRR073303	Juvenile bud 1	4.270
	CRR073304	Juvenile bud 2	4.399
	CRR073305	Juvenile bud 3	6.073
	CRR073306	Third green 1	4.559
	CRR073307	Third green 2	3.574
	CRR073308	Third green 3	4.206
	CRR073309	Second white 1	4.079
	CRR073310	Second white 2	3.690
	CRR073311	Second white 3	5.179
	CRR073312	Silver flowering 1	4.686
	CRR073313	Silver flowering 2	3.243
	CRR073314	Silver flowering 3	2.374
	CRR073315	Gold flowering 1	4.002
	CRR073316	Gold flowering 2	3.894
	CRR073317	Gold flowering 3	3.544
	CRR073318	Tawny withering 1	5.345
	CRR073319	Tawny withering 2	5.318
	CRR073320	Tawny withering 3	6.066