Detail information of GWHGAAZE029360


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN20264.18.71584E-62Pre-mRNA-splicing factor 38A [Glycine soja]
Swissprottr|Q8LB54|PRP38_ARATH8E-56Pre-mRNA-splicing factor 38
trEMBLtr|I1NJ40|I1NJ40_SOYBN3E-62Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38250.1}
TAIR10AT2G40650.12E-46PRP38 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene2026815420268501+
GWHAAZE00000009mRNA2026815420268501+
GWHAAZE00000009exon2026815420268501+
GWHAAZE00000009CDS2026815420268501+
Transcript Sequence

Network for GWHGAAZE029360

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03371.16PRP3810975.80E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12849PRPF38A Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.963
SRR3591706second leaf3.226
SRR3591707mature leaf3.838
SRR3591708Shoot apex4.997
SRR3591709Stem3.161
SRR3591710White floral bud17.420
SRR3591711White flower13.866
SRR3591712Green floral bud17.495
SRR3591713Yellow flower9.121
SRP173429 SRR8316895Juvenile bud stage 20.255
SRR8316896Juvenile bud stage 29.410
SRR8316897Juvenile bud stage 3.065
SRR8316894Third green stage 10.905
SRR8316900Third green stage 34.309
SRR8316901Third green stage 27.393
SRR8316898Complete white stage 8.074
SRR8316899Complete white stage 39.021
SRR8316903Complete white stage 14.406
SRR8316902Silver flowering stage11.819
SRR8316904Silver flowering stage18.174
SRR8316905Silver flowering stage7.318
SRR8316906Gold flowering stage 19.146
SRR8316907Gold flowering stage 19.876
SRR8316908Gold flowering stage 10.277
SRP132670SRR6706286Control28.946
SRR6706287Light intensity 50%32.286
SRR6706288Light intensity 20%37.276
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.024
CNS0095593Slightly white alabastrum(diploid) 27.647
CNS0095594Slightly white alabastrum(diploid) 37.776
CNS0095595Whole white alabastrum(diploid) 28.580
CNS0095596Whole white alabastrum(diploid) 36.567
CNS0095597Whole white alabastrum(diploid) 44.529
CNS0095598Silvery flower (diploied) 112.350
CNS0095599Silvery flower (diploied) 217.218
CNS0095600Silvery flower (diploied) 327.072
CNS0095601Golden flower (diploid) 119.081
CNS0095602Golden flower (diploid) 226.037
CNS0095603Golden flower (diploid) 321.707
CNS0095604Slightly white alabastrum(tetraploid) 13.375
CNS0095605Slightly white alabastrum(tetraploid) 22.729
CNS0095606Slightly white alabastrum(tetraploid) 37.703
CNS0095607Whole white alabastrum(tetraploid) 11.222
CNS0095608Whole white alabastrum(tetraploid) 21.385
CNS0095609Whole white alabastrum(tetraploid) 35.851
CNS0095610Silvery flower (tetraploid) 16.445
CNS0095611Silvery flower (tetraploid) 24.022
CNS0095612Silvery flower (tetraploid) 34.359
CNS0095613Golden flower (tetraploid) 14.401
CNS0095614Golden flower (tetraploid) 26.485
CNS0095615Golden flower (tetraploid) 33.169
CRA001975CRR073297Stem 111.725
CRR073298Stem 213.036
CRR073299Stem 32.332
CRR073300Leaf 116.794
CRR073301Leaf 212.910
CRR073302Leaf 32.234
CRR073303Juvenile bud 13.107
CRR073304Juvenile bud 22.634
CRR073305Juvenile bud 33.084
CRR073306Third green 11.660
CRR073307Third green 21.036
CRR073308Third green 30.751
CRR073309Second white 10.499
CRR073310Second white 21.875
CRR073311Second white 30.511
CRR073312Silver flowering 11.988
CRR073313Silver flowering 21.710
CRR073314Silver flowering 30.482
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.441
CRR073317Gold flowering 30.131
CRR073318Tawny withering 13.259
CRR073319Tawny withering 21.882
CRR073320Tawny withering 32.345