Detail information of GWHGAAZE029339


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006307689.10hypothetical protein CARUB_v10009315mg [Capsella rubella]
COGYP_001515056.11E-174pyruvate dehydrogenase E1 component beta subunit
Swissprottr|O64688|ODPB3_ARATH0Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (Precursor)
trEMBLtr|R0GXC1|R0GXC1_9BRAS0Uncharacterized protein {ECO:0000313|EMBL:EOA40587.1}
TAIR10AT2G34590.12E-168Transketolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene1968313019684053-
GWHAAZE00000009mRNA1968313019684053-
GWHAAZE00000009exon1968313019684053-
GWHAAZE00000009CDS1968313019684053-
Transcript Sequence

Network for GWHGAAZE029339

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.25Transket_pyr11615.30E-44
PF02780.21Transketolase_C1772982.80E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00162PDHB, pdhB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.033
SRR3591706second leaf69.758
SRR3591707mature leaf4.297
SRR3591708Shoot apex62.052
SRR3591709Stem12.882
SRR3591710White floral bud17.720
SRR3591711White flower9.362
SRR3591712Green floral bud60.631
SRR3591713Yellow flower16.036
SRP173429 SRR8316895Juvenile bud stage 43.402
SRR8316896Juvenile bud stage 65.370
SRR8316897Juvenile bud stage 27.655
SRR8316894Third green stage 23.641
SRR8316900Third green stage 97.225
SRR8316901Third green stage 91.872
SRR8316898Complete white stage 25.104
SRR8316899Complete white stage 64.715
SRR8316903Complete white stage 30.483
SRR8316902Silver flowering stage11.416
SRR8316904Silver flowering stage14.788
SRR8316905Silver flowering stage6.294
SRR8316906Gold flowering stage 18.044
SRR8316907Gold flowering stage 19.240
SRR8316908Gold flowering stage 16.278
SRP132670SRR6706286Control78.354
SRR6706287Light intensity 50%96.854
SRR6706288Light intensity 20%110.111
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.788
CNS0095593Slightly white alabastrum(diploid) 275.418
CNS0095594Slightly white alabastrum(diploid) 355.556
CNS0095595Whole white alabastrum(diploid) 263.751
CNS0095596Whole white alabastrum(diploid) 370.073
CNS0095597Whole white alabastrum(diploid) 458.130
CNS0095598Silvery flower (diploied) 120.133
CNS0095599Silvery flower (diploied) 232.441
CNS0095600Silvery flower (diploied) 344.367
CNS0095601Golden flower (diploid) 124.334
CNS0095602Golden flower (diploid) 244.473
CNS0095603Golden flower (diploid) 349.339
CNS0095604Slightly white alabastrum(tetraploid) 176.870
CNS0095605Slightly white alabastrum(tetraploid) 258.328
CNS0095606Slightly white alabastrum(tetraploid) 3104.199
CNS0095607Whole white alabastrum(tetraploid) 153.235
CNS0095608Whole white alabastrum(tetraploid) 261.591
CNS0095609Whole white alabastrum(tetraploid) 3108.006
CNS0095610Silvery flower (tetraploid) 142.968
CNS0095611Silvery flower (tetraploid) 248.111
CNS0095612Silvery flower (tetraploid) 341.499
CNS0095613Golden flower (tetraploid) 144.545
CNS0095614Golden flower (tetraploid) 260.974
CNS0095615Golden flower (tetraploid) 334.295
CRA001975CRR073297Stem 193.913
CRR073298Stem 289.449
CRR073299Stem 397.108
CRR073300Leaf 1147.330
CRR073301Leaf 2137.599
CRR073302Leaf 3159.965
CRR073303Juvenile bud 1121.883
CRR073304Juvenile bud 2155.700
CRR073305Juvenile bud 3120.052
CRR073306Third green 163.867
CRR073307Third green 255.595
CRR073308Third green 345.204
CRR073309Second white 147.523
CRR073310Second white 226.558
CRR073311Second white 317.115
CRR073312Silver flowering 139.604
CRR073313Silver flowering 263.586
CRR073314Silver flowering 344.654
CRR073315Gold flowering 130.676
CRR073316Gold flowering 233.678
CRR073317Gold flowering 346.436
CRR073318Tawny withering 170.724
CRR073319Tawny withering 232.260
CRR073320Tawny withering 382.814