Detail information of GWHGAAZE029323


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268998.10PREDICTED: protein FAR1-RELATED SEQUENCE 2 [Vitis vinifera]
Swissprottr|Q3EBQ3|FRS2_ARATH0Protein FAR1-RELATED SEQUENCE 2
trEMBLtr|F6HTN2|F6HTN2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58042.1}
TAIR10AT2G32250.45E-180FAR1-related sequence 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene1879086318792890+
GWHAAZE00000009mRNA1879086318792890+
GWHAAZE00000009exon1879086318792890+
GWHAAZE00000009CDS1879086318792890+
Transcript Sequence

Network for GWHGAAZE029323

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1661532.50E-23
PF10551.10MULE2343296.80E-22
PF04434.18SWIM5245513.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.433
SRR3591706second leaf2.101
SRR3591707mature leaf1.367
SRR3591708Shoot apex4.204
SRR3591709Stem3.936
SRR3591710White floral bud2.200
SRR3591711White flower2.562
SRR3591712Green floral bud2.978
SRR3591713Yellow flower1.779
SRP173429 SRR8316895Juvenile bud stage 2.483
SRR8316896Juvenile bud stage 2.184
SRR8316897Juvenile bud stage 5.886
SRR8316894Third green stage 1.428
SRR8316900Third green stage 3.599
SRR8316901Third green stage 2.389
SRR8316898Complete white stage 3.057
SRR8316899Complete white stage 4.887
SRR8316903Complete white stage 4.163
SRR8316902Silver flowering stage2.203
SRR8316904Silver flowering stage4.009
SRR8316905Silver flowering stage1.307
SRR8316906Gold flowering stage 4.879
SRR8316907Gold flowering stage 4.734
SRR8316908Gold flowering stage 7.100
SRP132670SRR6706286Control1.837
SRR6706287Light intensity 50%2.004
SRR6706288Light intensity 20%1.999
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.060
CNS0095593Slightly white alabastrum(diploid) 22.037
CNS0095594Slightly white alabastrum(diploid) 32.442
CNS0095595Whole white alabastrum(diploid) 21.430
CNS0095596Whole white alabastrum(diploid) 31.459
CNS0095597Whole white alabastrum(diploid) 41.610
CNS0095598Silvery flower (diploied) 13.235
CNS0095599Silvery flower (diploied) 23.180
CNS0095600Silvery flower (diploied) 36.804
CNS0095601Golden flower (diploid) 13.294
CNS0095602Golden flower (diploid) 25.300
CNS0095603Golden flower (diploid) 34.577
CNS0095604Slightly white alabastrum(tetraploid) 12.687
CNS0095605Slightly white alabastrum(tetraploid) 22.286
CNS0095606Slightly white alabastrum(tetraploid) 34.627
CNS0095607Whole white alabastrum(tetraploid) 11.358
CNS0095608Whole white alabastrum(tetraploid) 20.854
CNS0095609Whole white alabastrum(tetraploid) 32.827
CNS0095610Silvery flower (tetraploid) 15.962
CNS0095611Silvery flower (tetraploid) 24.155
CNS0095612Silvery flower (tetraploid) 32.686
CNS0095613Golden flower (tetraploid) 13.340
CNS0095614Golden flower (tetraploid) 24.486
CNS0095615Golden flower (tetraploid) 33.838
CRA001975CRR073297Stem 12.155
CRR073298Stem 23.029
CRR073299Stem 32.500
CRR073300Leaf 13.360
CRR073301Leaf 23.694
CRR073302Leaf 32.601
CRR073303Juvenile bud 13.320
CRR073304Juvenile bud 22.935
CRR073305Juvenile bud 33.938
CRR073306Third green 11.875
CRR073307Third green 21.081
CRR073308Third green 32.214
CRR073309Second white 11.291
CRR073310Second white 20.626
CRR073311Second white 31.204
CRR073312Silver flowering 11.206
CRR073313Silver flowering 20.896
CRR073314Silver flowering 31.524
CRR073315Gold flowering 12.564
CRR073316Gold flowering 22.295
CRR073317Gold flowering 32.085
CRR073318Tawny withering 12.440
CRR073319Tawny withering 22.596
CRR073320Tawny withering 32.593