Gene detail

Detail information of GWHGAAZE029226

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010259649.1	PREDICTED: luminal-binding protein 4-like [Nelumbo nucifera]
COG	YP_031785.1	molecular chaperone DnaK
Swissprot	tr\|Q03685\|BIP5_TOBAC	Luminal-binding protein 5 (Precursor)
trEMBL	tr\|V4TAP7\|V4TAP7_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR46641.1}
TAIR10	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	14163905	14168274	+
GWHAAZE00000009	mRNA	14163905	14168274	+
GWHAAZE00000009	exon	14163905	14163959	+
GWHAAZE00000009	exon	14164946	14165210	+
GWHAAZE00000009	exon	14165741	14165955	+
GWHAAZE00000009	exon	14166149	14166832	+
GWHAAZE00000009	exon	14167183	14167337	+
GWHAAZE00000009	exon	14167426	14167508	+
GWHAAZE00000009	exon	14167574	14167583	+
GWHAAZE00000009	exon	14167783	14168274	+
GWHAAZE00000009	CDS	14163905	14163959	+
GWHAAZE00000009	CDS	14164946	14165210	+
GWHAAZE00000009	CDS	14165741	14165955	+
GWHAAZE00000009	CDS	14166149	14166832	+
GWHAAZE00000009	CDS	14167183	14167337	+
GWHAAZE00000009	CDS	14167426	14167508	+
GWHAAZE00000009	CDS	14167574	14167583	+
GWHAAZE00000009	CDS	14167783	14168274	+

Transcript Sequence
>GWHTAAZE029260 ATGGCTGTGGTGAAGAAGAAAGCAATAGTCTTTCTTGTTCTCTTTGTTGTTTCTGTTTTGTTAGTTGGAGTAGCAGCGGGTGAGGAATCTGCCTCGAACAGTACCATAATTGGCATTGATTTAGGGACCACATATTCATGTGTGGGAGTGTACAGAAACGATCATGTGGAAATAATAGCCAATGATCAAGGAAACAGAATCACCCCATCATGGGTAGCGTTCACAGACACGGAGCGTCTGATTGGGGAGGCTGCAAAGAATCAAGCGGCTCTCAATGCAGAACGCACCATCTTTGACGTTAAACGTCTCATTGGAAGAAGGTTTGATGATCCTGAGGTTCAAAGAGACATGAAAATGTTGCCTTATAACATAGTTAACAAAAATGGGAAGCCATACATAGAGGTTAAGATCAAAGATGGCGAGGTTAAGATTTTTAGCCCTGAGGAGATCAGCGCTATGATGCTGGGGAAGATGAAGGAGACGGCTGAGTCGTATTTGGGAAAGAAAATTAAAGACGCGGTCGTCACTGTTCCAGCTTACTTCAACGACGCGCAAAGGCAAGCCACCAAAGACGCTGGCACTATAGCTGGGCTCAACGTGGTCCGAATTATCAATGAGCCCACAGCTGCATCAATTTCCTATGGTCTAGACAAGAAAGGAGAGGCGAAGAACATTTTAGTTTTTGACCTTGGGGGCGGTACATTCGACGTGAGTATCTTGACCATTGATGAAGGAGTTTTTGAGGTTCTCGCCACAAGTGGAGACACCCACTTAGGAGGAGAAGATTTCGATCATAGAATAATGGAGTATTTCATCAAACTAATCAAAAAGAAGTACAATAAAGACATTAGCAAAGATAACAAGGCTTTAGGAAAGCTTAGGAAGGAGAGTGAGAGGGCTAAGAGGGCTTTGAGCAGCCAACACCAAGTCCGGGTCGAGATCGAGTCACTATTCGACGGGGTTGACTTTTCGGAGCCACTGACCCGGGCAAGGTTTGAGGAATTGAATATCGATTTGTTCAAGAAGACGATGGGCCCGGTAAAGAAGGCGATGAAGGATGCAGGTTTGAAGAAGAGCGAAGTGGATGAGATAGTGCTTGTTGGTGGGAGCACTAGGATTCCAAAGGTGCAAGAGCTTTTGAAGGATTACTTTGAGGGGAAAGAGCCTAATAAGGGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCTGCCGTTCAAGGGGTTATTGTGCTTGATGTTGCTCCCTTGAGTTTGGGGATTGAAACTGTTGGTGGGGTGATGACAAAATTGATCCCAAGAAACTCGGTTATCCCTACGAAGAAATCTCAGGTCTTCTCAACTTACCAAGATCAACAAACCACTGTATCTATCAAGGTGTATGAAGGCGAAAGGAGCTTAACTAAAGATTGTCACGAACTTGGGCGGTTTGAACTATCCGGCATTCCACCAGCTCCGAGATTACCAGAAGGGGGAGTGCCTCAAATAGAGGTGACATTTGAGGTAGATGCAAACAGCATATTACACGTGAAGGCGGAAGACAAGGCTGGAAAGAAGTCACAATCCATAACCATAAGTAATGAGAAGGGGCGCTTGAGCAAAGAAGAGATTGCACAAATGGTGAAAGAAGCAGAGGAGTTCGCAGAGGAGGACAATAAGGTGAAAGAGAAAATCGACGCCAAAAACAGCTTGGAGACTTACATTTACAACATGAAGACCACCATTAACGACAAGCTGGCTGATAAGATTAGTGGTGAAGATAAAGAAAAGATTGAGACCGCGCTAAACGAGGGGCTTGATTGGTTGGATAGTGAGAGCCAAAATGCAGAGAAAGAAGATTTTGACGAGAAGATGAAGGAGATTGAAGCAACTTGTAATCCAATTATAAAACAGGTTTATGATGATAGTAATAGTGGAGGCGGTTATGAAGATGAAGATGAAGAGTCTAATGATGAGTTATAG

Network for GWHGAAZE029226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	36	632	2.00E-248

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09490	HSPA5, BIP	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.560
	SRR3591711	White flower	1.009
	SRR3591712	Green floral bud	0.043
	SRR3591713	Yellow flower	10.670
SRP173429	SRR8316895	Juvenile bud stage	1.008
	SRR8316896	Juvenile bud stage	0.779
	SRR8316897	Juvenile bud stage	0.118
	SRR8316894	Third green stage	0.687
	SRR8316900	Third green stage	2.424
	SRR8316901	Third green stage	2.768
	SRR8316898	Complete white stage	3.349
	SRR8316899	Complete white stage	3.197
	SRR8316903	Complete white stage	6.890
	SRR8316902	Silver flowering stage	8.090
	SRR8316904	Silver flowering stage	3.963
	SRR8316905	Silver flowering stage	0.257
	SRR8316906	Gold flowering stage	0.647
	SRR8316907	Gold flowering stage	2.582
	SRR8316908	Gold flowering stage	0.152
SRP132670	SRR6706286	Control	2.734
	SRR6706287	Light intensity 50%	2.305
	SRR6706288	Light intensity 20%	2.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.363
	CNS0095593	Slightly white alabastrum(diploid) 2	1.774
	CNS0095594	Slightly white alabastrum(diploid) 3	0.533
	CNS0095595	Whole white alabastrum(diploid) 2	1.287
	CNS0095596	Whole white alabastrum(diploid) 3	1.864
	CNS0095597	Whole white alabastrum(diploid) 4	1.349
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.302
	CNS0095600	Silvery flower (diploied) 3	1.766
	CNS0095601	Golden flower (diploid) 1	0.575
	CNS0095602	Golden flower (diploid) 2	4.397
	CNS0095603	Golden flower (diploid) 3	4.501
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.362
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.340
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.762
	CNS0095610	Silvery flower (tetraploid) 1	2.071
	CNS0095611	Silvery flower (tetraploid) 2	0.067
	CNS0095612	Silvery flower (tetraploid) 3	0.442
	CNS0095613	Golden flower (tetraploid) 1	0.240
	CNS0095614	Golden flower (tetraploid) 2	0.140
	CNS0095615	Golden flower (tetraploid) 3	8.580
CRA001975	CRR073297	Stem 1	0.409
	CRR073298	Stem 2	0.265
	CRR073299	Stem 3	0.856
	CRR073300	Leaf 1	0.891
	CRR073301	Leaf 2	1.180
	CRR073302	Leaf 3	1.026
	CRR073303	Juvenile bud 1	1.742
	CRR073304	Juvenile bud 2	0.466
	CRR073305	Juvenile bud 3	1.794
	CRR073306	Third green 1	3.147
	CRR073307	Third green 2	4.351
	CRR073308	Third green 3	4.734
	CRR073309	Second white 1	0.086
	CRR073310	Second white 2	0.341
	CRR073311	Second white 3	0.367
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.180
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.027
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.001
	CRR073318	Tawny withering 1	0.001
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.026