Gene detail

Detail information of GWHGAAZE029150

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAU86910.1	2.69735E-49	lipoxygenase [Apium graveolens Dulce Group]
Swissprot	tr\|Q43191\|LOX15_SOLTU	9E-45	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|Q5YB48\|Q5YB48_APIGR	1E-49	Lipoxygenase {ECO:0000313\|EMBL:AAU86910.1} (Fragment)
TAIR10	AT1G55020.1	2E-30	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8742730	8743038	+
GWHAAZE00000009	mRNA	8742730	8743038	+
GWHAAZE00000009	exon	8742730	8743038	+
GWHAAZE00000009	CDS	8742730	8743038	+

Transcript Sequence
>GWHTAAZE029184 ATGAATACTCGAAACGAGCTAGTAGAATCATGTACAACCATCATATGGGTTGCTTCTGCCCTCCATGCAGCCGTGAATTTCGGACAGTACCCTTATGGAGGGTACCCCCCAAACCCAAAAAAGGCTTACTTAAAAATAATCACAAGCCAACTCCAGAGTGTACTTGGGATTTCCCTCATTGAGATACTGTCAAGGCATTCATCTGATGAAGTGTTTCTCGGGCAGAGAGATACTGCCGAATGGACAACCGACATGGAAGCAATAAAAGCCTTTGGGAGATTTGGGAAGAAGCTTGAAGAGATCGAGTAA

Network for GWHGAAZE029150

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	1	38	1.70E-16
PF00305.20	Lipoxygenase	38	102	1.30E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.371
	SRR3591706	second leaf	5.505
	SRR3591707	mature leaf	18.497
	SRR3591708	Shoot apex	14.623
	SRR3591709	Stem	23.151
	SRR3591710	White floral bud	16.981
	SRR3591711	White flower	32.939
	SRR3591712	Green floral bud	15.901
	SRR3591713	Yellow flower	18.626
SRP173429	SRR8316895	Juvenile bud stage	0.094
	SRR8316896	Juvenile bud stage	0.688
	SRR8316897	Juvenile bud stage	4.275
	SRR8316894	Third green stage	0.255
	SRR8316900	Third green stage	0.314
	SRR8316901	Third green stage	1.156
	SRR8316898	Complete white stage	0.093
	SRR8316899	Complete white stage	0.523
	SRR8316903	Complete white stage	0.294
	SRR8316902	Silver flowering stage	0.313
	SRR8316904	Silver flowering stage	0.596
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.495
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	8.477
SRP132670	SRR6706286	Control	0.080
	SRR6706287	Light intensity 50%	0.064
	SRR6706288	Light intensity 20%	0.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.235
	CNS0095593	Slightly white alabastrum(diploid) 2	0.161
	CNS0095594	Slightly white alabastrum(diploid) 3	0.123
	CNS0095595	Whole white alabastrum(diploid) 2	0.065
	CNS0095596	Whole white alabastrum(diploid) 3	0.191
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	0.320
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.127
	CNS0095601	Golden flower (diploid) 1	0.128
	CNS0095602	Golden flower (diploid) 2	0.158
	CNS0095603	Golden flower (diploid) 3	0.157
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.543
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.053
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.886
	CNS0095610	Silvery flower (tetraploid) 1	2.724
	CNS0095611	Silvery flower (tetraploid) 2	3.955
	CNS0095612	Silvery flower (tetraploid) 3	0.992
	CNS0095613	Golden flower (tetraploid) 1	11.686
	CNS0095614	Golden flower (tetraploid) 2	4.282
	CNS0095615	Golden flower (tetraploid) 3	0.527
CRA001975	CRR073297	Stem 1	0.080
	CRR073298	Stem 2	0.479
	CRR073299	Stem 3	0.094
	CRR073300	Leaf 1	0.041
	CRR073301	Leaf 2	0.022
	CRR073302	Leaf 3	0.122
	CRR073303	Juvenile bud 1	0.064
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.076
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.040
	CRR073309	Second white 1	0.034
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.294
	CRR073316	Gold flowering 2	0.329
	CRR073317	Gold flowering 3	0.281
	CRR073318	Tawny withering 1	1.307
	CRR073319	Tawny withering 2	0.817
	CRR073320	Tawny withering 3	0.466