Gene detail

Detail information of GWHGAAZE029148

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010431179.1	1.02172E-21	PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like [Camelina sativa]
Swissprot	tr\|Q43191\|LOX15_SOLTU	1E-22	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|K4B0V2\|K4B0V2_SOLLC	2E-21	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	3E-16	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8725608	8726644	+
GWHAAZE00000009	mRNA	8725608	8726644	+
GWHAAZE00000009	exon	8725608	8725684	+
GWHAAZE00000009	exon	8726103	8726192	+
GWHAAZE00000009	exon	8726548	8726644	+
GWHAAZE00000009	CDS	8725608	8725684	+
GWHAAZE00000009	CDS	8726103	8726192	+
GWHAAZE00000009	CDS	8726548	8726644	+

Transcript Sequence
>GWHTAAZE029182 ATGAACATTAATGCGCTTGCAAGGCAGACACTTATCAATGTTGGTGGGCTACTTGAAATGACAGTTTTCCCAATAAGAGGAATGGCAGTTGAGGACTCGAATTCTCCGCATGGCCTTCGGCTACTCATTCAGGATTACCCATTTGCCGTTGACGGGCTTGAGATATGTGTTTCTGCAAAGAGATATCTTGCCGAATGGACAACCGACATGGAAGCAATAAAAGCCTTTGGGAGATTTGGGAAGAAGCTTGAAGAGATCGAGTAA

Network for GWHGAAZE029148

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	26	63	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.406
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.215
	SRR3591708	Shoot apex	0.053
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.212
SRP173429	SRR8316895	Juvenile bud stage	0.076
	SRR8316896	Juvenile bud stage	0.089
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.071
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.111
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.024
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.015
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.054
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.095
	CNS0095601	Golden flower (diploid) 1	0.231
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.057
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.034
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.035
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.016
	CRR073298	Stem 2	0.070
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.018
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.012
	CRR073316	Gold flowering 2	0.045
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.203
	CRR073319	Tawny withering 2	0.057
	CRR073320	Tawny withering 3	0.000