Gene detail

Detail information of GWHGAAZE029143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269977.2	0	PREDICTED: histidine kinase 2 [Vitis vinifera]
COG	NP_616936.1	5E-62	sensory transduction histidine kinase
Swissprot	tr\|Q9C5U2\|AHK2_ARATH	0	Histidine kinase 2
trEMBL	tr\|F6HHM7\|F6HHM7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51723.1}
TAIR10	AT5G35750.1	7E-167	histidine kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8623287	8627911	+
GWHAAZE00000009	mRNA	8623287	8627911	+
GWHAAZE00000009	exon	8623287	8623430	+
GWHAAZE00000009	exon	8623600	8623769	+
GWHAAZE00000009	exon	8623881	8624003	+
GWHAAZE00000009	exon	8624184	8624370	+
GWHAAZE00000009	exon	8624567	8624618	+
GWHAAZE00000009	exon	8624703	8624933	+
GWHAAZE00000009	exon	8625093	8625139	+
GWHAAZE00000009	exon	8625399	8625802	+
GWHAAZE00000009	exon	8626761	8626971	+
GWHAAZE00000009	exon	8627095	8627267	+
GWHAAZE00000009	exon	8627734	8627911	+
GWHAAZE00000009	CDS	8623287	8623430	+
GWHAAZE00000009	CDS	8623600	8623769	+
GWHAAZE00000009	CDS	8623881	8624003	+
GWHAAZE00000009	CDS	8624184	8624370	+
GWHAAZE00000009	CDS	8624567	8624618	+
GWHAAZE00000009	CDS	8624703	8624933	+
GWHAAZE00000009	CDS	8625093	8625139	+
GWHAAZE00000009	CDS	8625399	8625802	+
GWHAAZE00000009	CDS	8626761	8626971	+
GWHAAZE00000009	CDS	8627095	8627267	+
GWHAAZE00000009	CDS	8627734	8627911	+

Transcript Sequence
>GWHTAAZE029177 ATGGAAACTGAGGATCAAAATTTAGTCCAAGACTGTAACCCAAAGAATTTCGATCCTTCACCTGTTCAAAATGAGTATGCCCCCGTCATATTTTCTCAAGAAACTGTCTCCCATATCGTCTCCATTGACATGATGTCTGGAAACGAAGATCGTGACAACATCTTGCGAGCACGGGCATCTGGAACGGGTGTCCTTACGTCTCCTTTTAAGCTATTAAAATCCAATCACCTCGGTGCTGTTCTTACTTTTGCCATCTATAACACTGACCTTCCTCTATATGCTACACCAGAGCAATGTATTAATGCCACTGTCGGGTATCTTGGTGCATCTTATGAAGTCCCATCGGTATTGGAGAAGCTTCTACATCAACTTGCTAGCAAGAAAACCATAGTGGTGAATGTGTATAATACAACCAACAAATCCGCGTCGATTAATATGTTCAAGCAGGTCCAACCTCCACCTTGGACAGCCATAGCAGCATCGGTTGGAGTTATTGTAACCACTTTGCTTCTTAGTCAAATCTTTCATGTAGTCATAAACCGAATTGCAAAAGTTGAGCATGATTATCGGGAGATGGTGGAGCTCAAACTTCGCGCTGAAGCTGCAGATATAGCAAAATCTCAGTTTCTTGCTACAGTTTCCCATGAAATCGGGACCCCAATGAACGGTGTTTTAGGCATGCTGCAGATGCTTATAGACATGGACCTTGATGCAAACCAACTGGATTATGCAGAGACTGCTCATGCTAGTGGAAAAGGTTTAATATCTTTGATTAATGAGGTTCTTGATCAGGCTAAGATTGAATCGAGCAGGCTTGAACTTGAGGCTGTACCTTTTGATGTGCGTGCTGCTCTTGATAATGTTTTATCTCTTTTCTTGGGAAAATCTCGTGAAAAAAGGGATTCAGGGCGGTTGCGGCAGATAATTGCAAATCTTGTCGAAAATTCAATTAAGTTCATACAAGACAAAGGACACATATTTGTCTCGGTGCATTTAGCTGAAGAAGCTAGATACCAACTCAATTTGAAAAAGGAAATGCTTAGACAAAGCCTGACCTCCATTCAAGACTGGCCAAACAATTCTTATAACACATTGAGCGGTTACCCAGTTGTCGACAGAAGGAAAAGCTGGTCTAATTTCAAAAGATTAAACAACACATATTTGAATGAAGGGACCAAAGTGATCAAAGTACTAGTGACTGTTGAAGACACGGGAGTGGGAATTCCACTCGAAGCCCAAGAACGCATTTTCATGCCGTTTATTCAGGCCGACAGTTCCACGTCTCGAACCTACGGTGGGATAGGAATAGGTCTGAGCATTAGCAAGCAGTTGGTGGAACTTATGGGCAGTGAAATCAGTGCATCGGTTCATTTAGCCATGACTCTGGTCGATAAGGAAACTTGGAACGAAAAGACGGGACTTTCATTCCATCATCTTCTCAAAGAATTCAAATCAAATGAGGGCAAAAACTTACCGGAGCTCACTCCGAAGACATTTCTATTGGCAACCTCTACATGCACCACCATCTGTAATGATCTCAAATCGGCCGGTTTAGTGGATAATGTGCTTATTTTGGTGGTGGATGATAATATGGTTAATAGAAGAGTGGCTGAAGGCGCTCTTAAGAAGTATGGTGCAATTGTTACTTGTTTGGATAGCGGGAAGGATGCTTTAAGGATGCTTAACCCTCCCCACAGCTTTGATGCTTGCTTCATGGATCTCCAAATGCCTGAAATGGACGGTCTAGAGAGGAAGTTTAACCTTTCAAATGAGGATCATTGGCATACGCCGATATTGGCAATGACAGCTAATGTGATACAAGCGACAACCAAAGAGTGCTCAAAGTGTGGAATGGACGGTTATATGGCAAAGCCATTTCAAGAAGAACAGCTTTATTTTGCAGCCGCACCCTTCTTTTGA

Network for GWHGAAZE029143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03924.14	CHASE	20	145	6.70E-18
PF00512.26	HisKA	205	269	6.00E-14
PF02518.27	HATPase_c	301	454	1.70E-24
PF00072.25	Response_reg	524	632	6.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14489	AHK2_3_4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.307
	SRR3591706	second leaf	0.189
	SRR3591707	mature leaf	0.089
	SRR3591708	Shoot apex	0.489
	SRR3591709	Stem	0.487
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.018
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.016
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.001
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000