Gene detail

Detail information of GWHGAAZE029103

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P06215.1CHIT_PHAVU	3.45376E-83	RecName: Full=Endochitinase; Flags: Precursor [Phaseolus vulgaris]
COG	YP_003125181.1	1E-29	chitinase
Swissprot	tr\|P06215\|CHIT_PHAVU	2E-85	Endochitinase (Precursor)
trEMBL	tr\|A0A058ZU91\|A0A058ZU91_EUCGR	2E-82	Uncharacterized protein {ECO:0000313\|EMBL:KCW45373.1}
TAIR10	AT3G12500.1	2E-56	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	7121792	7123949	-
GWHAAZE00000009	mRNA	7121792	7123949	-
GWHAAZE00000009	exon	7121792	7121972	-
GWHAAZE00000009	exon	7122705	7122858	-
GWHAAZE00000009	exon	7122964	7123177	-
GWHAAZE00000009	exon	7123881	7123949	-
GWHAAZE00000009	CDS	7123881	7123949	-
GWHAAZE00000009	CDS	7122964	7123177	-
GWHAAZE00000009	CDS	7122705	7122858	-
GWHAAZE00000009	CDS	7121792	7121972	-

Transcript Sequence
>GWHTAAZE029137 ATGTTACTGGTGCTACTACTTATTGGTGGTGCCTCAGCACAGGAATGTGGTCGCCAAGCTGCTGGTGCAGGTGGGGGCAACTCCGACATCATTAGCCGTGAGCTGTTCGATGAAATGCTCAAGCACCGCAATGACCCCCGTTGCCAGGCGGTAGGATTTTATACTTACGATGCTTTTGTAACAGCGGCCGCGTATTTTCCTGGTTTTGGAACAACTGGTGACACCGCTACGCGTCAAAGGGAAATTGCTGCTTTTCTTGGCCAAACTTCTCATGAAACTACTGGGGGTTGGCCTACCGCTGATGATGGCCCATACGCTTGGGGGTATTGCTTTGTCAGAGAAGTTTCGCCGGGTTGGAATTATTGTGTTCAAAATGTTCAGTACCCGTGTGCTCCAGGTCAAGCATATTATGGCCGAGGTCCCATTCAAATTTCTTACGAACAACTACCAAAGCCATCGTGCCATGATGTTGTTATAGGAACTTGGACCCCATCCACTGCTGAAGTAGTAGCCGGCCGTCTTCCTGGGTACGGTGTTACCACAAACATTATAAATGGCGGCTGCGAATGTGGGATTGGTCCAGATTCCAAAGTTGAAGACCGTATTGGATTCTATAAA

Network for GWHGAAZE029103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	30	147	1.60E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	39.617
	SRR3591707	mature leaf	266.490
	SRR3591708	Shoot apex	11.819
	SRR3591709	Stem	0.125
	SRR3591710	White floral bud	0.426
	SRR3591711	White flower	1.968
	SRR3591712	Green floral bud	0.798
	SRR3591713	Yellow flower	0.436
SRP173429	SRR8316895	Juvenile bud stage	0.211
	SRR8316896	Juvenile bud stage	0.049
	SRR8316897	Juvenile bud stage	0.024
	SRR8316894	Third green stage	0.253
	SRR8316900	Third green stage	0.046
	SRR8316901	Third green stage	0.167
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	0.061
	SRR8316903	Complete white stage	0.135
	SRR8316902	Silver flowering stage	0.035
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.012
	SRR8316906	Gold flowering stage	0.485
	SRR8316907	Gold flowering stage	0.725
	SRR8316908	Gold flowering stage	0.199
SRP132670	SRR6706286	Control	4.636
	SRR6706287	Light intensity 50%	0.091
	SRR6706288	Light intensity 20%	0.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.419
	CNS0095593	Slightly white alabastrum(diploid) 2	0.122
	CNS0095594	Slightly white alabastrum(diploid) 3	0.499
	CNS0095595	Whole white alabastrum(diploid) 2	0.029
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.014
	CNS0095598	Silvery flower (diploied) 1	0.028
	CNS0095599	Silvery flower (diploied) 2	0.036
	CNS0095600	Silvery flower (diploied) 3	0.034
	CNS0095601	Golden flower (diploid) 1	0.262
	CNS0095602	Golden flower (diploid) 2	0.085
	CNS0095603	Golden flower (diploid) 3	0.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.099
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.069
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.011
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.093
	CNS0095610	Silvery flower (tetraploid) 1	0.127
	CNS0095611	Silvery flower (tetraploid) 2	0.689
	CNS0095612	Silvery flower (tetraploid) 3	0.459
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.137
	CNS0095615	Golden flower (tetraploid) 3	0.146
CRA001975	CRR073297	Stem 1	0.671
	CRR073298	Stem 2	0.395
	CRR073299	Stem 3	0.910
	CRR073300	Leaf 1	0.035
	CRR073301	Leaf 2	0.200
	CRR073302	Leaf 3	0.446
	CRR073303	Juvenile bud 1	0.105
	CRR073304	Juvenile bud 2	0.062
	CRR073305	Juvenile bud 3	0.114
	CRR073306	Third green 1	0.139
	CRR073307	Third green 2	0.143
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.322
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.033
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	0.100
	CRR073316	Gold flowering 2	0.271
	CRR073317	Gold flowering 3	0.187
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000