Gene detail

Detail information of GWHGAAZE029102

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACP43629.2	1.9301E-115	chitinase [Musa AB Group]
COG	YP_003125181.1	1E-44	chitinase
Swissprot	tr\|P29059\|CHI3_TOBAC	1E-112	Endochitinase 3 (Precursor)
trEMBL	tr\|C3VD22\|C3VD22_MUSPR	7E-116	Chitinase {ECO:0000313\|EMBL:ACP43629.2}
TAIR10	AT3G12500.1	1E-86	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	7083748	7087103	-
GWHAAZE00000009	mRNA	7083748	7087103	-
GWHAAZE00000009	exon	7087014	7087103	-
GWHAAZE00000009	exon	7086175	7086257	-
GWHAAZE00000009	exon	7084913	7085127	-
GWHAAZE00000009	exon	7084664	7084817	-
GWHAAZE00000009	exon	7083748	7084036	-
GWHAAZE00000009	CDS	7087014	7087103	-
GWHAAZE00000009	CDS	7086175	7086257	-
GWHAAZE00000009	CDS	7084913	7085127	-
GWHAAZE00000009	CDS	7084664	7084817	-
GWHAAZE00000009	CDS	7083748	7084036	-

Transcript Sequence
>GWHTAAZE029136 ATGGGTCGAAGGAAATGGAGTTTTTGCTCCTTCTTTTACCAGTTGCATTTACTAGACTCTACATGCTTTATAGAAGATGTGGATAGCTTGGGTGGTGCCTCAGCACAGGAATGTGGTCGCCAAGCTGCTGGTGCAGTCTGCCTGGGTGGGCTTTGCTATAGTGAATACGGATGTGGTGGGGGCATCCCCGACATCATTAGCCGCGAGCTGTTCGATCAAATGCTCAAGCACCGCAATGACCCCCGTTGCCAGGCGGTAGGATTTTATACTTACAATGCTTTTGTAACAGCGGCCGCGTATTTTCATGGTTTTGGAACAACTGGTGATACCGCTACGCGTCAAAGGGAAATTGCTGCTTTTCTTGGCCAAACTTCTCATGAAACTACTGGGGGTTGGGCTACCGCTGATGATAGCCCATACGCTTGGGGATATTGCTATCTTAGAGAAGTTTCGCCCGGTTGGAATTATTGTGTTCAAAATATTCAGTACCCGTGTGCTCCAGGTCAAGCATATTACGGCCGAGGTCCCATTCAAATTTCGTACGACTACAATTGTGGGCCGACTGGAGAGGCTATAGGCGAGGATCTACTTAACAATCCAAATATGGTAGCTATTGATGTAGTTGTTTCATTTAAGATAGCAATTTGGTTCTGGATGACCGAACAACTACCAAAGCCATCGTGCCATGATGTTGTTATAGGAACTTGGACCCCATCCGCTGCTGAAGTAGCAGCCGGCCGTCTTCCTGGGTATGGTGTTACCACAAACATTATAAATGGCGGCTACGAATGTGGGATTGGTCCAGATTCCAGAGTTGAAGACTGTATTTGA

Network for GWHGAAZE029102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	65	276	2.80E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.021
	SRR3591706	second leaf	20.556
	SRR3591707	mature leaf	112.481
	SRR3591708	Shoot apex	3.362
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.231
	SRR3591711	White flower	0.225
	SRR3591712	Green floral bud	0.071
	SRR3591713	Yellow flower	0.543
SRP173429	SRR8316895	Juvenile bud stage	0.036
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.016
	SRR8316900	Third green stage	0.016
	SRR8316901	Third green stage	0.396
	SRR8316898	Complete white stage	0.013
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.042
	SRR8316902	Silver flowering stage	0.191
	SRR8316904	Silver flowering stage	0.005
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.013
	SRR8316907	Gold flowering stage	0.111
	SRR8316908	Gold flowering stage	0.010
SRP132670	SRR6706286	Control	0.096
	SRR6706287	Light intensity 50%	0.066
	SRR6706288	Light intensity 20%	0.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.012
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.122
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.164
	CNS0095598	Silvery flower (diploied) 1	1.132
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.028
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.103
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.009
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	1.765
	CRR073298	Stem 2	0.167
	CRR073299	Stem 3	0.929
	CRR073300	Leaf 1	0.046
	CRR073301	Leaf 2	0.041
	CRR073302	Leaf 3	0.042
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.158
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.072
	CRR073307	Third green 2	0.150
	CRR073308	Third green 3	0.262
	CRR073309	Second white 1	0.102
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.053
	CRR073312	Silver flowering 1	0.008
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.610
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000