Detail information of GWHGAAZE029101


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKGN48980.17.5809E-154hypothetical protein Csa_6G508020 [Cucumis sativus]
COGYP_003125181.13E-52chitinase
Swissprottr|P06215|CHIT_PHAVU6E-144Endochitinase (Precursor)
trEMBLtr|A0A0A0KGV0|A0A0A0KGV0_CUCSA3E-154Uncharacterized protein {ECO:0000313|EMBL:KGN48980.1}
TAIR10AT3G12500.11E-103basic chitinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene70686637070503-
GWHAAZE00000009mRNA70686637070503-
GWHAAZE00000009exon70686637069032-
GWHAAZE00000009exon70696057069758-
GWHAAZE00000009exon70698647070503-
GWHAAZE00000009CDS70698647070503-
GWHAAZE00000009CDS70696057069758-
GWHAAZE00000009CDS70686637069032-
Transcript Sequence

Network for GWHGAAZE029101

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00187.20Chitin_bind_123613.60E-11
PF00187.20Chitin_bind_1791171.80E-11
PF00182.20Glyco_hydro_191493804.80E-128
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20547CHIB Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0006032biological_processchitin catabolic process
GO:0016998biological_processcell wall macromolecule catabolic process
GO:0005975biological_processcarbohydrate metabolic process
GO:0004568molecular_functionchitinase activity
GO:0008061molecular_functionchitin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.815
SRR3591706second leaf1916.989
SRR3591707mature leaf11643.150
SRR3591708Shoot apex510.124
SRR3591709Stem5.584
SRR3591710White floral bud336.346
SRR3591711White flower531.863
SRR3591712Green floral bud98.938
SRR3591713Yellow flower462.890
SRP173429 SRR8316895Juvenile bud stage 133.120
SRR8316896Juvenile bud stage 74.598
SRR8316897Juvenile bud stage 11.808
SRR8316894Third green stage 24.696
SRR8316900Third green stage 60.379
SRR8316901Third green stage 106.175
SRR8316898Complete white stage 125.323
SRR8316899Complete white stage 28.150
SRR8316903Complete white stage 86.440
SRR8316902Silver flowering stage58.501
SRR8316904Silver flowering stage96.201
SRR8316905Silver flowering stage44.622
SRR8316906Gold flowering stage 119.762
SRR8316907Gold flowering stage 414.614
SRR8316908Gold flowering stage 148.299
SRP132670SRR6706286Control301.411
SRR6706287Light intensity 50%299.338
SRR6706288Light intensity 20%209.400
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.854
CNS0095593Slightly white alabastrum(diploid) 222.953
CNS0095594Slightly white alabastrum(diploid) 331.618
CNS0095595Whole white alabastrum(diploid) 25.997
CNS0095596Whole white alabastrum(diploid) 319.210
CNS0095597Whole white alabastrum(diploid) 47.148
CNS0095598Silvery flower (diploied) 1173.775
CNS0095599Silvery flower (diploied) 285.336
CNS0095600Silvery flower (diploied) 397.934
CNS0095601Golden flower (diploid) 1132.580
CNS0095602Golden flower (diploid) 291.189
CNS0095603Golden flower (diploid) 383.571
CNS0095604Slightly white alabastrum(tetraploid) 114.616
CNS0095605Slightly white alabastrum(tetraploid) 221.289
CNS0095606Slightly white alabastrum(tetraploid) 310.401
CNS0095607Whole white alabastrum(tetraploid) 12.093
CNS0095608Whole white alabastrum(tetraploid) 22.482
CNS0095609Whole white alabastrum(tetraploid) 39.241
CNS0095610Silvery flower (tetraploid) 169.523
CNS0095611Silvery flower (tetraploid) 2308.889
CNS0095612Silvery flower (tetraploid) 3293.574
CNS0095613Golden flower (tetraploid) 131.731
CNS0095614Golden flower (tetraploid) 250.933
CNS0095615Golden flower (tetraploid) 376.783
CRA001975CRR073297Stem 1309.802
CRR073298Stem 2242.568
CRR073299Stem 3835.568
CRR073300Leaf 142.132
CRR073301Leaf 264.714
CRR073302Leaf 391.794
CRR073303Juvenile bud 123.427
CRR073304Juvenile bud 2100.353
CRR073305Juvenile bud 338.859
CRR073306Third green 1132.200
CRR073307Third green 2161.371
CRR073308Third green 3157.686
CRR073309Second white 1165.790
CRR073310Second white 254.311
CRR073311Second white 369.273
CRR073312Silver flowering 159.024
CRR073313Silver flowering 239.349
CRR073314Silver flowering 346.480
CRR073315Gold flowering 157.973
CRR073316Gold flowering 252.066
CRR073317Gold flowering 3199.034
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.156
CRR073320Tawny withering 30.007