Gene detail

Detail information of GWHGAAZE029045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006433312.1	0	hypothetical protein CICLE_v10000541mg [Citrus clementina]
trEMBL	tr\|V4T0A6\|V4T0A6_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR46552.1}
TAIR10	AT5G27540.2	4E-115	MIRO-related GTP-ase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	3287783	3300829	+
GWHAAZE00000009	mRNA	3287783	3300829	+
GWHAAZE00000009	exon	3287783	3287911	+
GWHAAZE00000009	exon	3289598	3289653	+
GWHAAZE00000009	exon	3292399	3292480	+
GWHAAZE00000009	exon	3293653	3293864	+
GWHAAZE00000009	exon	3293971	3294040	+
GWHAAZE00000009	exon	3295613	3295725	+
GWHAAZE00000009	exon	3296939	3297089	+
GWHAAZE00000009	exon	3298512	3298698	+
GWHAAZE00000009	exon	3300756	3300829	+
GWHAAZE00000009	CDS	3287783	3287911	+
GWHAAZE00000009	CDS	3289598	3289653	+
GWHAAZE00000009	CDS	3292399	3292480	+
GWHAAZE00000009	CDS	3293653	3293864	+
GWHAAZE00000009	CDS	3293971	3294040	+
GWHAAZE00000009	CDS	3295613	3295725	+
GWHAAZE00000009	CDS	3296939	3297089	+
GWHAAZE00000009	CDS	3298512	3298698	+
GWHAAZE00000009	CDS	3300756	3300829	+

Transcript Sequence
>GWHTAAZE029079 ATGGGTTGGAAGAACCCAAATCCAGTAGCAAATAAGATGGGAGGGGAGCTAAACCTTACATCCCTAAAGAACAAACCTATTAAAGACTATAGATTAGGAGAGCTGAGTTTAGAAAGACCGAGATGGAAGGATGGAGCCCTTCGACAAGATGAACTAGAGGATCTTTTTTCCACTGCACCAGAAAGTCCTTGGAGTGATGCTCCATATGAGGATGCTGCAGAGAAAAATGCCTTGGGAGGGCTCTCACTTGATGGGTTTTTATCTGAGTGGGCCCTTATGACACTTCTAGACCCAATTCGTAGTGTGGAGAACCTTATATACCTTGGATATACTAGTGATCCTTCTTCAGCCATCCGTGTCACTCGAAGAAGACGCTTAGATCGCAAAAAGCAACAATCAGACAGAAATGTTTTCCAGTGTTTTGTTTTCGGGCCAAAAGAGGCTGGAAAGTCAGCATTATTAAATTCTTTTATTGGAAGGCCTTTCATTGATGCTTATGTTTCAACCACTGACGAGCGTTATGCGGTTAACATTGTTGATCAGCCTGGGGGAACTAAGAAAACTCTAGCATTGCGAGAAATACCAGAAGATGGAGTTGGAAAATTGTTATCCAAGCGGGATGCTTTGGCGGCCTGTGACATAGCAATTTTTGTTCATGATAGTTCTGATGAGTCGTCATGGAAGAGAGCAACAGAACTGCTTGTGGAAGTAGCTAGTCAAGGAGAATCTACTGGCCATGAGGTCCCATGCCTGATTGTTGCAGCCAAAGATGATCTTGATCCTTATCTGACCGGAATACAAGATTCAACACGGGTTAGTCAGGATATGGGGATAGAGGCCCCTATTCCTATCAGCACAAAGCTGGGGGATTTTAATTATCTATTTAGAAGGATTGTAAGTGCGGCAGAACACCCCCATTTGAGCATACCTGAAACTGAAGCTGGGAAAAGCCGCAAGCAGTACCATCGTCTTATTAACCGCTCACTCATGTTTGTTTCTGTTGGTGCTGCAGTAGCCGTTGTTGGACTGGCAGCTTACCGTGTTTATGCTGCAAGGAAGAACACCTCTACTTGA

Network for GWHGAAZE029045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08355.13	EF_assoc_1	64	132	3.90E-21
PF00071.23	Ras	141	261	3.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07870	RHOT1, ARHT1	Mitophagy - animal	map04137
K07870	RHOT1, ARHT1	Apoptosis - fly	map04214

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.166
	SRR3591706	second leaf	42.609
	SRR3591707	mature leaf	55.913
	SRR3591708	Shoot apex	70.721
	SRR3591709	Stem	82.740
	SRR3591710	White floral bud	90.322
	SRR3591711	White flower	155.092
	SRR3591712	Green floral bud	93.126
	SRR3591713	Yellow flower	145.778
SRP173429	SRR8316895	Juvenile bud stage	52.213
	SRR8316896	Juvenile bud stage	74.553
	SRR8316897	Juvenile bud stage	35.536
	SRR8316894	Third green stage	27.199
	SRR8316900	Third green stage	87.487
	SRR8316901	Third green stage	82.593
	SRR8316898	Complete white stage	44.835
	SRR8316899	Complete white stage	111.259
	SRR8316903	Complete white stage	63.116
	SRR8316902	Silver flowering stage	59.257
	SRR8316904	Silver flowering stage	66.095
	SRR8316905	Silver flowering stage	34.268
	SRR8316906	Gold flowering stage	156.600
	SRR8316907	Gold flowering stage	133.291
	SRR8316908	Gold flowering stage	150.124
SRP132670	SRR6706286	Control	61.884
	SRR6706287	Light intensity 50%	64.311
	SRR6706288	Light intensity 20%	70.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.826
	CNS0095593	Slightly white alabastrum(diploid) 2	79.419
	CNS0095594	Slightly white alabastrum(diploid) 3	68.074
	CNS0095595	Whole white alabastrum(diploid) 2	73.764
	CNS0095596	Whole white alabastrum(diploid) 3	77.092
	CNS0095597	Whole white alabastrum(diploid) 4	69.141
	CNS0095598	Silvery flower (diploied) 1	76.339
	CNS0095599	Silvery flower (diploied) 2	78.261
	CNS0095600	Silvery flower (diploied) 3	135.815
	CNS0095601	Golden flower (diploid) 1	91.049
	CNS0095602	Golden flower (diploid) 2	125.670
	CNS0095603	Golden flower (diploid) 3	122.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	78.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	110.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	58.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.715
	CNS0095610	Silvery flower (tetraploid) 1	137.975
	CNS0095611	Silvery flower (tetraploid) 2	156.979
	CNS0095612	Silvery flower (tetraploid) 3	125.984
	CNS0095613	Golden flower (tetraploid) 1	111.120
	CNS0095614	Golden flower (tetraploid) 2	147.383
	CNS0095615	Golden flower (tetraploid) 3	168.523
CRA001975	CRR073297	Stem 1	67.190
	CRR073298	Stem 2	63.879
	CRR073299	Stem 3	68.524
	CRR073300	Leaf 1	74.001
	CRR073301	Leaf 2	66.853
	CRR073302	Leaf 3	64.128
	CRR073303	Juvenile bud 1	89.228
	CRR073304	Juvenile bud 2	65.924
	CRR073305	Juvenile bud 3	103.644
	CRR073306	Third green 1	36.331
	CRR073307	Third green 2	36.936
	CRR073308	Third green 3	38.459
	CRR073309	Second white 1	85.623
	CRR073310	Second white 2	82.043
	CRR073311	Second white 3	72.240
	CRR073312	Silver flowering 1	78.504
	CRR073313	Silver flowering 2	96.350
	CRR073314	Silver flowering 3	69.009
	CRR073315	Gold flowering 1	33.401
	CRR073316	Gold flowering 2	44.195
	CRR073317	Gold flowering 3	36.325
	CRR073318	Tawny withering 1	71.792
	CRR073319	Tawny withering 2	67.376
	CRR073320	Tawny withering 3	68.876