Gene detail

Detail information of GWHGAAZE029044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284757.1	0	PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera]
Swissprot	tr\|Q38912\|RAC3_ARATH	7E-15	Rac-like GTP-binding protein ARAC3 (Precursor)
trEMBL	tr\|D7U1Z9\|D7U1Z9_VITVI	0	Mitochondrial Rho GTPase {ECO:0000256\|PIRNR:PIRNR037488}
TAIR10	AT5G27540.2	3E-146	MIRO-related GTP-ase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	3281448	3287458	+
GWHAAZE00000009	mRNA	3281448	3287458	+
GWHAAZE00000009	exon	3281448	3281662	+
GWHAAZE00000009	exon	3282934	3283066	+
GWHAAZE00000009	exon	3283345	3283494	+
GWHAAZE00000009	exon	3284507	3284683	+
GWHAAZE00000009	exon	3284880	3285131	+
GWHAAZE00000009	exon	3286707	3286775	+
GWHAAZE00000009	exon	3287321	3287458	+
GWHAAZE00000009	CDS	3281448	3281662	+
GWHAAZE00000009	CDS	3282934	3283066	+
GWHAAZE00000009	CDS	3283345	3283494	+
GWHAAZE00000009	CDS	3284507	3284683	+
GWHAAZE00000009	CDS	3284880	3285131	+
GWHAAZE00000009	CDS	3286707	3286775	+
GWHAAZE00000009	CDS	3287321	3287458	+

Transcript Sequence
>GWHTAAZE029078 ATGGCGGGAGGTGGTGGTTCTGCTGCGAAGACTAGCTCCGCGGGAGTTCGAATCGTCGTCGCCGGAGACCGTGGTACCGGAAAGACTGGCCTGATTGTTACAGCCGCCACCGATAATTTTCCGATTAATCCTGCTCCGGTGCTGCCTCCGATGAGATTGCCCGACGATCTCTATCCCGATAGAGTCCCTGTTACTATTATAGACACTTCGTCAAGTGTGGAGGATAGAAGTAAACTGGCCGAAGAACTAAAGCGAGCTGATGCAGTTGTGCTTACTTATGCATGTGATCAGCCTGCTACCCTTGATCGATTGAGTACTTTCTGGCTTCCTGAACTTCGACGATTAGAGGTAAAGGTGCCAGTTATAGTGGTGGGTTGTAAACTGGATCTGAGGGATGAGCAGCAACCAGTTAGTTTGGAGCAGGTGATGTCGCCTATAATGCAACAATTTCGGGAGATCGAAACTTGTATTGAATGTTCAGCATTTAAACATATTCAGATACCTGAGGTTTTCTACTATGCACAAAAAGCAGTTCTTCATCCGACAGCTCCACTATTTGATCAGGAAGCACAAACTTTGAAGCCCCGATGTGTGAGGGCTTTAAAACGGATATTTATTCTTTGTGATCATGACAGGGATGGTGCCCTCAGTGATGCAGAGTTAAATGATTTTCAGGTCAAGTGTTTCAATGCTCCATTACAACCTTCTGAGATAGTGGGCGTTAAAAGGGTTGTCCAAGAAAAACTGCCTCAAGGCGTTAATGACCGTGGTCTTACTTTGACAGGATTCTTATTTCTTCATGCACTGTTCATAGAAAAGGGTCGTTTGGAGACAACATGGACCGTCTTAAGGAAATTTGGTTACAATAATGATATCAGACTCAGTGATGATCAGCTTCCACCTCCAATTAAACGACATCCTGATCAGAGTGTGGAGTTGACAACTGAAGCTGTGGAATTTCTCAAAGGTGTCTTTTATATGTACGACATTGATGGTCGCAAAATTGATTCAGTTCGTAACAAACTCAAAACGTATGAAGTGAAGCTTGCGCCAGCACTTATGCTTGTTGAGAGAAGTACTGAAGTGATATCAGTTTTGGTTGAGACTGGACTGGATGTTGGGCAAGTTATGTGA

Network for GWHGAAZE029044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	17	178	1.10E-12
PF08356.13	EF_assoc_2	232	316	2.20E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07870	RHOT1, ARHT1	Mitophagy - animal	map04137
K07870	RHOT1, ARHT1	Apoptosis - fly	map04214

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.263
	SRR3591706	second leaf	34.045
	SRR3591707	mature leaf	42.384
	SRR3591708	Shoot apex	58.899
	SRR3591709	Stem	58.291
	SRR3591710	White floral bud	86.298
	SRR3591711	White flower	144.787
	SRR3591712	Green floral bud	65.965
	SRR3591713	Yellow flower	130.279
SRP173429	SRR8316895	Juvenile bud stage	42.715
	SRR8316896	Juvenile bud stage	56.031
	SRR8316897	Juvenile bud stage	27.279
	SRR8316894	Third green stage	22.070
	SRR8316900	Third green stage	72.364
	SRR8316901	Third green stage	63.269
	SRR8316898	Complete white stage	35.830
	SRR8316899	Complete white stage	95.258
	SRR8316903	Complete white stage	60.437
	SRR8316902	Silver flowering stage	47.537
	SRR8316904	Silver flowering stage	67.203
	SRR8316905	Silver flowering stage	35.043
	SRR8316906	Gold flowering stage	146.530
	SRR8316907	Gold flowering stage	131.306
	SRR8316908	Gold flowering stage	149.282
SRP132670	SRR6706286	Control	50.288
	SRR6706287	Light intensity 50%	51.212
	SRR6706288	Light intensity 20%	58.879
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.432
	CNS0095593	Slightly white alabastrum(diploid) 2	21.296
	CNS0095594	Slightly white alabastrum(diploid) 3	22.204
	CNS0095595	Whole white alabastrum(diploid) 2	30.898
	CNS0095596	Whole white alabastrum(diploid) 3	28.238
	CNS0095597	Whole white alabastrum(diploid) 4	23.089
	CNS0095598	Silvery flower (diploied) 1	37.327
	CNS0095599	Silvery flower (diploied) 2	42.890
	CNS0095600	Silvery flower (diploied) 3	128.853
	CNS0095601	Golden flower (diploid) 1	35.698
	CNS0095602	Golden flower (diploid) 2	114.689
	CNS0095603	Golden flower (diploid) 3	112.532
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.885
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.421
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.458
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.538
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.068
	CNS0095610	Silvery flower (tetraploid) 1	125.886
	CNS0095611	Silvery flower (tetraploid) 2	139.841
	CNS0095612	Silvery flower (tetraploid) 3	102.691
	CNS0095613	Golden flower (tetraploid) 1	59.585
	CNS0095614	Golden flower (tetraploid) 2	109.925
	CNS0095615	Golden flower (tetraploid) 3	153.609
CRA001975	CRR073297	Stem 1	47.838
	CRR073298	Stem 2	38.922
	CRR073299	Stem 3	49.552
	CRR073300	Leaf 1	55.612
	CRR073301	Leaf 2	39.524
	CRR073302	Leaf 3	50.095
	CRR073303	Juvenile bud 1	50.530
	CRR073304	Juvenile bud 2	47.559
	CRR073305	Juvenile bud 3	68.769
	CRR073306	Third green 1	29.623
	CRR073307	Third green 2	23.851
	CRR073308	Third green 3	25.763
	CRR073309	Second white 1	69.109
	CRR073310	Second white 2	75.381
	CRR073311	Second white 3	66.419
	CRR073312	Silver flowering 1	59.587
	CRR073313	Silver flowering 2	76.135
	CRR073314	Silver flowering 3	60.909
	CRR073315	Gold flowering 1	22.757
	CRR073316	Gold flowering 2	40.623
	CRR073317	Gold flowering 3	33.005
	CRR073318	Tawny withering 1	30.977
	CRR073319	Tawny withering 2	23.618
	CRR073320	Tawny withering 3	37.427