Detail information of GWHGAAZE029040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620406.12.07842E-65PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis]
Swissprottr|Q9LNT9|ASK4_ARATH1E-54SKP1-like protein 4
trEMBLtr|A5C7K8|A5C7K8_VITVI7E-65Putative uncharacterized protein {ECO:0000313|EMBL:CAN73136.1}
TAIR10AT1G75950.11E-38S phase kinase-associated protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene30577663060187-
GWHAAZE00000009mRNA30577663060187-
GWHAAZE00000009exon30598853060187-
GWHAAZE00000009exon30577663058230-
GWHAAZE00000009CDS30598853060187-
GWHAAZE00000009CDS30580603058230-
GWHAAZE00000009three_prime_UTR30577663058059-
Transcript Sequence

Network for GWHGAAZE029040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.16Skp1_POZ6677.20E-19
PF01466.20Skp11091551.00E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf166.282
SRR3591706second leaf14.465
SRR3591707mature leaf34.522
SRR3591708Shoot apex54.244
SRR3591709Stem219.253
SRR3591710White floral bud139.705
SRR3591711White flower293.941
SRR3591712Green floral bud137.899
SRR3591713Yellow flower168.384
SRP173429 SRR8316895Juvenile bud stage 97.163
SRR8316896Juvenile bud stage 141.601
SRR8316897Juvenile bud stage 82.974
SRR8316894Third green stage 54.942
SRR8316900Third green stage 202.333
SRR8316901Third green stage 173.608
SRR8316898Complete white stage 186.636
SRR8316899Complete white stage 299.138
SRR8316903Complete white stage 245.688
SRR8316902Silver flowering stage302.967
SRR8316904Silver flowering stage308.685
SRR8316905Silver flowering stage137.612
SRR8316906Gold flowering stage 256.040
SRR8316907Gold flowering stage 353.824
SRR8316908Gold flowering stage 217.642
SRP132670SRR6706286Control245.201
SRR6706287Light intensity 50%226.456
SRR6706288Light intensity 20%241.753
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1164.201
CNS0095593Slightly white alabastrum(diploid) 2193.552
CNS0095594Slightly white alabastrum(diploid) 3175.086
CNS0095595Whole white alabastrum(diploid) 2158.116
CNS0095596Whole white alabastrum(diploid) 3161.118
CNS0095597Whole white alabastrum(diploid) 4169.419
CNS0095598Silvery flower (diploied) 1306.335
CNS0095599Silvery flower (diploied) 2397.097
CNS0095600Silvery flower (diploied) 3826.543
CNS0095601Golden flower (diploid) 1339.450
CNS0095602Golden flower (diploid) 2581.893
CNS0095603Golden flower (diploid) 3566.690
CNS0095604Slightly white alabastrum(tetraploid) 1148.148
CNS0095605Slightly white alabastrum(tetraploid) 2129.736
CNS0095606Slightly white alabastrum(tetraploid) 3170.210
CNS0095607Whole white alabastrum(tetraploid) 1118.184
CNS0095608Whole white alabastrum(tetraploid) 2131.076
CNS0095609Whole white alabastrum(tetraploid) 3202.485
CNS0095610Silvery flower (tetraploid) 1676.086
CNS0095611Silvery flower (tetraploid) 2511.092
CNS0095612Silvery flower (tetraploid) 3371.121
CNS0095613Golden flower (tetraploid) 1520.001
CNS0095614Golden flower (tetraploid) 2344.657
CNS0095615Golden flower (tetraploid) 3338.929
CRA001975CRR073297Stem 1189.495
CRR073298Stem 2173.085
CRR073299Stem 3287.349
CRR073300Leaf 1217.633
CRR073301Leaf 2224.881
CRR073302Leaf 3321.248
CRR073303Juvenile bud 1355.949
CRR073304Juvenile bud 2315.077
CRR073305Juvenile bud 3333.275
CRR073306Third green 1417.137
CRR073307Third green 2477.757
CRR073308Third green 3408.814
CRR073309Second white 1607.223
CRR073310Second white 2380.334
CRR073311Second white 3224.147
CRR073312Silver flowering 1236.544
CRR073313Silver flowering 2373.669
CRR073314Silver flowering 3211.929
CRR073315Gold flowering 1154.676
CRR073316Gold flowering 2150.061
CRR073317Gold flowering 3158.419
CRR073318Tawny withering 1153.044
CRR073319Tawny withering 2223.985
CRR073320Tawny withering 3177.394