Detail information of GWHGAAZE029030


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002512361.11.59188E-55protein binding protein, putative [Ricinus communis]
Swissprottr|Q9FMF5|RPT3_ARATH4E-38Root phototropism protein 3
trEMBLtr|B9RF42|B9RF42_RICCO6E-56Protein binding protein, putative {ECO:0000313|EMBL:EEF49813.1}
TAIR10AT5G64330.11E-33Phototropic-responsive NPH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene27498482750309-
GWHAAZE00000009mRNA27498482750309-
GWHAAZE00000009exon27498482750309-
GWHAAZE00000009CDS27498482750309-
Transcript Sequence

Network for GWHGAAZE029030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.230
SRR3591706second leaf20.780
SRR3591707mature leaf11.069
SRR3591708Shoot apex3.222
SRR3591709Stem0.000
SRR3591710White floral bud0.142
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 5.527
SRR8316896Juvenile bud stage 3.897
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.920
SRR8316900Third green stage 2.037
SRR8316901Third green stage 2.946
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.044
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.509
SRR6706287Light intensity 50%1.589
SRR6706288Light intensity 20%1.973
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.545
CNS0095593Slightly white alabastrum(diploid) 20.110
CNS0095594Slightly white alabastrum(diploid) 31.549
CNS0095595Whole white alabastrum(diploid) 21.056
CNS0095596Whole white alabastrum(diploid) 30.423
CNS0095597Whole white alabastrum(diploid) 40.053
CNS0095598Silvery flower (diploied) 11.289
CNS0095599Silvery flower (diploied) 20.944
CNS0095600Silvery flower (diploied) 30.188
CNS0095601Golden flower (diploid) 11.072
CNS0095602Golden flower (diploid) 20.415
CNS0095603Golden flower (diploid) 30.388
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.216
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.215
CRR073298Stem 21.823
CRR073299Stem 30.204
CRR073300Leaf 11.449
CRR073301Leaf 21.374
CRR073302Leaf 31.320
CRR073303Juvenile bud 10.297
CRR073304Juvenile bud 20.120
CRR073305Juvenile bud 30.809
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.172
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 17.531
CRR073316Gold flowering 25.747
CRR073317Gold flowering 32.840
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000