Gene detail

Detail information of GWHGAAZE028981

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618425.1	0	PREDICTED: serine/threonine-protein kinase At5g01020 [Nicotiana tomentosiformis]
COG	YP_008151634.1	6E-28	hypothetical protein SCE1572_26190
Swissprot	tr\|Q8GXZ3\|Y5102_ARATH	2E-160	Serine/threonine-protein kinase At5g01020
trEMBL	tr\|M1B212\|M1B212_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035255}
TAIR10	AT2G07180.2	2E-160	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	684888	696195	-
GWHAAZE00000009	mRNA	684888	696195	-
GWHAAZE00000009	exon	695947	696195	-
GWHAAZE00000009	exon	689605	689740	-
GWHAAZE00000009	exon	689372	689508	-
GWHAAZE00000009	exon	688552	688675	-
GWHAAZE00000009	exon	684888	685510	-
GWHAAZE00000009	CDS	695947	696195	-
GWHAAZE00000009	CDS	689605	689740	-
GWHAAZE00000009	CDS	689372	689508	-
GWHAAZE00000009	CDS	688552	688675	-
GWHAAZE00000009	CDS	684888	685510	-

Transcript Sequence
>GWHTAAZE029015 ATGGTGATCAACAAGAATGTCAAGGATCTCCGGCAAAACCCTGGGAATAGCGATCTTGATATCTTCACGTATGAAGAAATGCAGTTATCAACCAAGCACTTCCGGCCAGATCAAGTTCTTGGTGAAGGAGGTTTTGGAATTGTATATAGAGGAGTTATAGACGAGAATGTGAGGCTTGGTTACAAGAAAACGCAAGTCGCAATTAAGGAGCTTGATCCAGAAGGAATCCAGGGCGACAGAGAATGGCTGGCTGAAGTGAACTACTTAGGGCAGCTCCGACACCCAAATCTTGTGAAGCTCATTGGCTACTGCTGTGACGATGACCACAGGCTTTTGGTCTATGAATACATGGCATCTGGGAGCTTGGAAAAACATCTTTTTCGTAGAGTGTGTGCTACCCTTACTTGGTCAAGAAGGATGAAGATTGCTTTGGATGTTGCAAAAGGGCTCGCTTTTCTTCATGGTGCAGAAAGACCAATCATATATCGGGATTTCAAGACATCAAATATCCTGCTTGATGTGGATTTTAATGCAAAGCTTTCTGACTTTGGACTAGCAAAGGATGGGCCTATGGGAGATCAAACCCATGTGTCAACACGAGTTATGGGCACATATGGATATGCAGCTCCCGAGTATGTGATGACCGGGCATTTAACGGCTAGAAGCGACGTGTACGGATTTGGGGTGGTGCTACTTGAGATGCTGATAGGCAGGCGAGCAATGGACAAGAGTAGGCCAAGCCGAGAGCATAACCTCGTGGAGTGGGCCCGGCCGATCCTGAACCACAGCAAGAAGCTTCTGAGGATACTAGACCCCAGAATGGATGGGCAATACTCTTCCAAAACTGCGATAAAGGCTGCTAATCTCGCGTACCAATGCCTCAGTCAAAACCCAAAAGGTCGGCCCGCTATGAACCAAGTGGTTGAAATACTTGAATCGCTTCAATCCCGAGAAGAAGAGGAGGCGATTTTGTTTCAAGCCGGCAGCTTAACATTGTACGAAGTTCCAAAAGAGAAGAAGAAAAGTAATGAGACCACAAGAGAAGGAAAAAGAGAAAAAGACTCGAGTACTAGTCCTAATGCGGGGGGTACAACTAGAAAGGCGATAGCAGTTGGAGTAAATGGAAGGAGTAAGAGTGAGCCTCCAAAGGATTGTGACCTTTACAGCAACATCATTAGTAGTGGCAGCCCTTCTCCAGATAGTATTGTTGCTGCTGCTGCTGATGAACACGGATCTTCTTCATCTGCTTCTGTTGTTGTTGGTATTTGA

Network for GWHGAAZE028981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	36	309	3.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.538
	SRR3591706	second leaf	14.721
	SRR3591707	mature leaf	16.458
	SRR3591708	Shoot apex	14.708
	SRR3591709	Stem	15.186
	SRR3591710	White floral bud	11.304
	SRR3591711	White flower	9.034
	SRR3591712	Green floral bud	24.539
	SRR3591713	Yellow flower	5.845
SRP173429	SRR8316895	Juvenile bud stage	20.619
	SRR8316896	Juvenile bud stage	27.500
	SRR8316897	Juvenile bud stage	18.251
	SRR8316894	Third green stage	6.638
	SRR8316900	Third green stage	17.911
	SRR8316901	Third green stage	22.588
	SRR8316898	Complete white stage	4.718
	SRR8316899	Complete white stage	35.801
	SRR8316903	Complete white stage	7.442
	SRR8316902	Silver flowering stage	3.159
	SRR8316904	Silver flowering stage	4.978
	SRR8316905	Silver flowering stage	1.725
	SRR8316906	Gold flowering stage	6.222
	SRR8316907	Gold flowering stage	4.605
	SRR8316908	Gold flowering stage	7.356
SRP132670	SRR6706286	Control	17.496
	SRR6706287	Light intensity 50%	19.428
	SRR6706288	Light intensity 20%	21.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.294
	CNS0095593	Slightly white alabastrum(diploid) 2	28.948
	CNS0095594	Slightly white alabastrum(diploid) 3	24.561
	CNS0095595	Whole white alabastrum(diploid) 2	20.650
	CNS0095596	Whole white alabastrum(diploid) 3	16.138
	CNS0095597	Whole white alabastrum(diploid) 4	17.373
	CNS0095598	Silvery flower (diploied) 1	21.339
	CNS0095599	Silvery flower (diploied) 2	20.475
	CNS0095600	Silvery flower (diploied) 3	13.828
	CNS0095601	Golden flower (diploid) 1	20.873
	CNS0095602	Golden flower (diploid) 2	15.305
	CNS0095603	Golden flower (diploid) 3	16.292
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.544
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.228
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.927
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.109
	CNS0095610	Silvery flower (tetraploid) 1	22.057
	CNS0095611	Silvery flower (tetraploid) 2	22.931
	CNS0095612	Silvery flower (tetraploid) 3	14.555
	CNS0095613	Golden flower (tetraploid) 1	10.040
	CNS0095614	Golden flower (tetraploid) 2	17.190
	CNS0095615	Golden flower (tetraploid) 3	3.564
CRA001975	CRR073297	Stem 1	16.784
	CRR073298	Stem 2	14.465
	CRR073299	Stem 3	15.877
	CRR073300	Leaf 1	14.830
	CRR073301	Leaf 2	14.584
	CRR073302	Leaf 3	12.424
	CRR073303	Juvenile bud 1	11.594
	CRR073304	Juvenile bud 2	6.268
	CRR073305	Juvenile bud 3	10.865
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.551
	CRR073308	Third green 3	0.478
	CRR073309	Second white 1	1.167
	CRR073310	Second white 2	1.082
	CRR073311	Second white 3	0.504
	CRR073312	Silver flowering 1	0.166
	CRR073313	Silver flowering 2	0.732
	CRR073314	Silver flowering 3	0.621
	CRR073315	Gold flowering 1	18.208
	CRR073316	Gold flowering 2	27.627
	CRR073317	Gold flowering 3	16.475
	CRR073318	Tawny withering 1	18.148
	CRR073319	Tawny withering 2	13.947
	CRR073320	Tawny withering 3	18.593