Gene detail

Detail information of GWHGAAZE028938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009764253.1	0	PREDICTED: probable receptor-like protein kinase At1g80640 [Nicotiana sylvestris]
COG	YP_003372407.1	2E-28	serine/threonine protein kinase
Swissprot	tr\|Q0V7T5\|Y1864_ARATH	7E-148	Probable receptor-like protein kinase At1g80640 (Precursor)
trEMBL	tr\|A0A068VGI3\|A0A068VGI3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_288 {ECO:0000313\|EMBL:CDP18793.1}
TAIR10	AT2G25220.1	2E-146	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73430414	73433809	+
GWHAAZE00000008	mRNA	73430414	73433809	+
GWHAAZE00000008	exon	73430414	73430555	+
GWHAAZE00000008	exon	73430707	73430957	+
GWHAAZE00000008	exon	73431193	73431325	+
GWHAAZE00000008	exon	73431463	73431526	+
GWHAAZE00000008	exon	73431620	73431716	+
GWHAAZE00000008	exon	73431861	73431963	+
GWHAAZE00000008	exon	73432612	73432730	+
GWHAAZE00000008	exon	73432839	73432928	+
GWHAAZE00000008	exon	73433648	73433809	+
GWHAAZE00000008	CDS	73430414	73430555	+
GWHAAZE00000008	CDS	73430707	73430957	+
GWHAAZE00000008	CDS	73431193	73431325	+
GWHAAZE00000008	CDS	73431463	73431526	+
GWHAAZE00000008	CDS	73431620	73431716	+
GWHAAZE00000008	CDS	73431861	73431963	+
GWHAAZE00000008	CDS	73432612	73432730	+
GWHAAZE00000008	CDS	73432839	73432928	+
GWHAAZE00000008	CDS	73433648	73433809	+

Transcript Sequence
>GWHTAAZE028972 ATGGATTCAAAGAAGAAGCTGATTATAGCACTCATTGGTACTTTCACTCTAATGGGATCAATCATATTGTCTATCATTTGTTTGTGGATTTATCACAGAAAGAACATTGACAAATCCCAAAAGGAGATTGCCCGTAAAACAGACGGTGTGAAAGGATTTGCATTTGCTCCTCTTATTCGTAAATATAGTTCTTTGAAGGTGAGTTTTAAGAAAGGATCTGTATCTTTGATGGAATATAAGTTTCTCGAGAAAGCTACAAACAATTTCCGGGAAAGTGATATTTTGGGTGAAGGGGGATTTGGGTGTGTATATAAGGCCCGTCTGGATTCAAATTTTTATGCCGCTGTAAAGAGATTAGACGATGGATGCCAAGATGCCATAAGAGAATTTGAGACCGAGGTGGATTTGTTGAGTAAAATTCAGCATCCAAATATAATTTCTCTGTTGGGTTATAGCATTCAAGGAGATAGTAGGCTTCTTGTTTATGAATTGATGGAGAATGGATCTTTAGAAACTCAGTTGCATGGTCCATCTCATGGATCAGCTCTAACATGGCATCTCCGGATGAAAATCGCTCTCGACACTGCAAGAGCATTAGAATACTTGCATGAGCACTGCAACCCACAAGTGATTCATAGAGATCTGAAATCATCTAATATTCTTCTAGACAACAGCTTCAATGCCAAGCTTTCGGACTTTGGGCTAGCAGTGACTCACGGGACCCAAAATAGAAACAACATCAAGCTTTCAGGAACCTTGGGTTATGTAGCGCCCGAGTACCTTCTAGATGGTAAATTGACAGATAAAAGTGATGTGTATGCTTTTGGAGTTGTTCTTTTGGAGCTTCTTCTTGGAAGAAAGCCTGTGGAAAAATTGGCACCGTCTCAGTGCCAGTCTATTGTCACTTGGGCGATGCCTCAACTCACAGACAGATCAAAGCTTCCAAATATTGTGGATTCGGCGATAAGAGATACAATGGATCCAAAGCACTTATACCAAGTTGCTGCAGTAGCTGTGCTATGCATACAACCAGAACCGAGCTATCGACCATTGATAACAGACGTCTTACATTCTCTGATTCCACTCATCCCGGTCGAGCTTGGTGGTACTCTCAAAGTAACACAACACGCCCCTCTGGTTATCAACACCCCTACCGAGTAA

Network for GWHGAAZE028938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	90	357	3.00E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-X

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.205
	SRR3591706	second leaf	6.562
	SRR3591707	mature leaf	2.663
	SRR3591708	Shoot apex	5.008
	SRR3591709	Stem	3.637
	SRR3591710	White floral bud	4.876
	SRR3591711	White flower	0.757
	SRR3591712	Green floral bud	37.336
	SRR3591713	Yellow flower	0.384
SRP173429	SRR8316895	Juvenile bud stage	5.702
	SRR8316896	Juvenile bud stage	9.239
	SRR8316897	Juvenile bud stage	5.584
	SRR8316894	Third green stage	6.791
	SRR8316900	Third green stage	20.909
	SRR8316901	Third green stage	19.025
	SRR8316898	Complete white stage	1.602
	SRR8316899	Complete white stage	18.936
	SRR8316903	Complete white stage	2.430
	SRR8316902	Silver flowering stage	0.431
	SRR8316904	Silver flowering stage	0.345
	SRR8316905	Silver flowering stage	0.193
	SRR8316906	Gold flowering stage	0.208
	SRR8316907	Gold flowering stage	0.258
	SRR8316908	Gold flowering stage	0.371
SRP132670	SRR6706286	Control	15.541
	SRR6706287	Light intensity 50%	19.720
	SRR6706288	Light intensity 20%	21.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.420
	CNS0095593	Slightly white alabastrum(diploid) 2	6.570
	CNS0095594	Slightly white alabastrum(diploid) 3	3.252
	CNS0095595	Whole white alabastrum(diploid) 2	8.294
	CNS0095596	Whole white alabastrum(diploid) 3	10.507
	CNS0095597	Whole white alabastrum(diploid) 4	10.777
	CNS0095598	Silvery flower (diploied) 1	1.322
	CNS0095599	Silvery flower (diploied) 2	1.547
	CNS0095600	Silvery flower (diploied) 3	0.621
	CNS0095601	Golden flower (diploid) 1	1.128
	CNS0095602	Golden flower (diploid) 2	0.487
	CNS0095603	Golden flower (diploid) 3	0.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.593
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.614
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.005
	CNS0095610	Silvery flower (tetraploid) 1	0.350
	CNS0095611	Silvery flower (tetraploid) 2	0.354
	CNS0095612	Silvery flower (tetraploid) 3	0.304
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.423
	CNS0095615	Golden flower (tetraploid) 3	0.116
CRA001975	CRR073297	Stem 1	13.142
	CRR073298	Stem 2	18.248
	CRR073299	Stem 3	14.275
	CRR073300	Leaf 1	31.716
	CRR073301	Leaf 2	33.908
	CRR073302	Leaf 3	32.229
	CRR073303	Juvenile bud 1	30.700
	CRR073304	Juvenile bud 2	16.137
	CRR073305	Juvenile bud 3	25.456
	CRR073306	Third green 1	0.715
	CRR073307	Third green 2	0.979
	CRR073308	Third green 3	0.648
	CRR073309	Second white 1	0.162
	CRR073310	Second white 2	0.139
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.163
	CRR073315	Gold flowering 1	0.762
	CRR073316	Gold flowering 2	2.433
	CRR073317	Gold flowering 3	1.619
	CRR073318	Tawny withering 1	9.834
	CRR073319	Tawny withering 2	7.355
	CRR073320	Tawny withering 3	4.629