Detail information of GWHGAAZE028928


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244761.10PREDICTED: uncharacterized protein LOC104588506 [Nelumbo nucifera]
trEMBLtr|K4CK38|K4CK38_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g041770.2.1}
TAIR10AT5G25265.11E-166Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene7313773373141539-
GWHAAZE00000008mRNA7313773373141539-
GWHAAZE00000008exon7313773373137792-
GWHAAZE00000008exon7313903473139147-
GWHAAZE00000008exon7313925173139322-
GWHAAZE00000008exon7313956773139636-
GWHAAZE00000008exon7313972273139819-
GWHAAZE00000008exon7314003973140240-
GWHAAZE00000008exon7314033573140402-
GWHAAZE00000008exon7314112973141539-
GWHAAZE00000008CDS7314112973141539-
GWHAAZE00000008CDS7314033573140402-
GWHAAZE00000008CDS7314003973140240-
GWHAAZE00000008CDS7313972273139819-
GWHAAZE00000008CDS7313956773139636-
GWHAAZE00000008CDS7313925173139322-
GWHAAZE00000008CDS7313903473139147-
GWHAAZE00000008CDS7313773373137792-
Transcript Sequence

Network for GWHGAAZE028928

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20782HPAT Other types of O-glycan biosynthesis map00514

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf84.097
SRR3591706second leaf47.256
SRR3591707mature leaf46.638
SRR3591708Shoot apex42.357
SRR3591709Stem81.611
SRR3591710White floral bud59.330
SRR3591711White flower92.125
SRR3591712Green floral bud62.274
SRR3591713Yellow flower65.340
SRP173429 SRR8316895Juvenile bud stage 41.751
SRR8316896Juvenile bud stage 45.737
SRR8316897Juvenile bud stage 21.778
SRR8316894Third green stage 23.203
SRR8316900Third green stage 70.759
SRR8316901Third green stage 61.854
SRR8316898Complete white stage 39.962
SRR8316899Complete white stage 120.365
SRR8316903Complete white stage 55.222
SRR8316902Silver flowering stage35.518
SRR8316904Silver flowering stage56.806
SRR8316905Silver flowering stage30.931
SRR8316906Gold flowering stage 92.111
SRR8316907Gold flowering stage 104.318
SRR8316908Gold flowering stage 104.107
SRP132670SRR6706286Control12.046
SRR6706287Light intensity 50%13.712
SRR6706288Light intensity 20%15.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.168
CNS0095593Slightly white alabastrum(diploid) 237.095
CNS0095594Slightly white alabastrum(diploid) 331.932
CNS0095595Whole white alabastrum(diploid) 231.792
CNS0095596Whole white alabastrum(diploid) 335.981
CNS0095597Whole white alabastrum(diploid) 429.914
CNS0095598Silvery flower (diploied) 166.746
CNS0095599Silvery flower (diploied) 246.619
CNS0095600Silvery flower (diploied) 389.872
CNS0095601Golden flower (diploid) 153.662
CNS0095602Golden flower (diploid) 284.963
CNS0095603Golden flower (diploid) 384.558
CNS0095604Slightly white alabastrum(tetraploid) 127.998
CNS0095605Slightly white alabastrum(tetraploid) 224.008
CNS0095606Slightly white alabastrum(tetraploid) 364.187
CNS0095607Whole white alabastrum(tetraploid) 121.514
CNS0095608Whole white alabastrum(tetraploid) 217.237
CNS0095609Whole white alabastrum(tetraploid) 339.918
CNS0095610Silvery flower (tetraploid) 197.263
CNS0095611Silvery flower (tetraploid) 273.446
CNS0095612Silvery flower (tetraploid) 347.367
CNS0095613Golden flower (tetraploid) 136.183
CNS0095614Golden flower (tetraploid) 254.747
CNS0095615Golden flower (tetraploid) 334.696
CRA001975CRR073297Stem 135.178
CRR073298Stem 228.238
CRR073299Stem 326.834
CRR073300Leaf 133.220
CRR073301Leaf 225.035
CRR073302Leaf 330.869
CRR073303Juvenile bud 139.593
CRR073304Juvenile bud 240.245
CRR073305Juvenile bud 337.736
CRR073306Third green 117.499
CRR073307Third green 217.064
CRR073308Third green 317.090
CRR073309Second white 121.659
CRR073310Second white 217.230
CRR073311Second white 313.765
CRR073312Silver flowering 111.625
CRR073313Silver flowering 28.643
CRR073314Silver flowering 310.137
CRR073315Gold flowering 124.281
CRR073316Gold flowering 242.031
CRR073317Gold flowering 327.838
CRR073318Tawny withering 151.377
CRR073319Tawny withering 251.338
CRR073320Tawny withering 344.607