Gene detail

Detail information of GWHGAAZE028897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285478.2	0	PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Vitis vinifera]
COG	YP_004625616.1	1E-154	cysteinyl-tRNA synthetase
trEMBL	tr\|B9IL05\|B9IL05_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF02877.2}
TAIR10	AT2G31170.1	0	Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	72339443	72347683	+
GWHAAZE00000008	mRNA	72339443	72347683	+
GWHAAZE00000008	exon	72339443	72339908	+
GWHAAZE00000008	exon	72340869	72340975	+
GWHAAZE00000008	exon	72341615	72341776	+
GWHAAZE00000008	exon	72342449	72342619	+
GWHAAZE00000008	exon	72343936	72344217	+
GWHAAZE00000008	exon	72344372	72344497	+
GWHAAZE00000008	exon	72344927	72345130	+
GWHAAZE00000008	exon	72346528	72346629	+
GWHAAZE00000008	exon	72347180	72347683	+
GWHAAZE00000008	CDS	72339443	72339908	+
GWHAAZE00000008	CDS	72340869	72340975	+
GWHAAZE00000008	CDS	72341615	72341776	+
GWHAAZE00000008	CDS	72342449	72342619	+
GWHAAZE00000008	CDS	72343936	72344217	+
GWHAAZE00000008	CDS	72344372	72344497	+
GWHAAZE00000008	CDS	72344927	72345130	+
GWHAAZE00000008	CDS	72346528	72346629	+
GWHAAZE00000008	CDS	72347180	72347416	+
GWHAAZE00000008	three_prime_UTR	72347417	72347683	+

Transcript Sequence
>GWHTAAZE028931 ATGACTAATCTTCTCAAGTATTACAAACCCTTATTTCCGTTCTCTCCCTCTCTAATCTCCTCAATCTCAAAATCCCTTGTCCACACCCACACCCACAAATTCTTCATTACTAAGAGTAATCCACACTCAACCAGAATCACTACTACTTTTCCTTCTATTCCATTGGTCCAATCTCGCCAATTGACGACACACAGCAACAGCAATGGGGATATAAGTACAGAGAAACAATCATCACAGCTCTGGGTTTACAATACAATGACCAAACGAAAGGAATTGTTCGAATCTAGGGTTCCTGGTAAAGTGGGTATGTATGTTTGTGGAGTTACTGCTTATGATCTCAGTCATATTGGTCATGCTCGCGTCTATGTCTCCTTTGATGTCCTCTTCAGGTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATATATATATATATATATATATATTGTATTAGGGTTTTTATTGATATTCTTGGTGTTTTATGTTTGGAATTAGGCAGATATCTAAGATATTTGGGATATGAAGTTAATTATGTTCGAAATTTCACAGATGTGGATGACAAGGTGAGTGAAATTATTAAAAGAGCTAATGAGTTGGGGGAGGATCCAATTAATTTGAGCAGACGTTATTGTGAAGAGTTTCATCGGGATATGGAGTATCTTCATTGCCTTTCTCCTTCTGTGGAGCCTCGTGTATCTGATCATATTCCCCAAATCCTTGATATGATTAAGCAGATTATTGATAATGGGTGTGGCTATGAAATTGATGGGGATGTTTACTTCTCCGTTGATAAATTTTCACAATATGGACGATTGTCAGGGAGAAAATTAGAAGACAATCGAGCGGGTGAGAGAGTGGTAGTGGACTCGAGGAAGAAAAACCCTGCTGATTTTTCTCTATGGAAATCTGCGAAGGAGGGAGAGCCCTTTTGGGAGAGTCCGTGGGGTCGGGGAAGACCTGGATGGCATATAGAGTGCAGTGCAATGAGTGCTGCTTATTTAGGTTACTCTTTTGACATACATGGTGGGGGTATGGATCTTGTTTTCCCTCACCACGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGACCAAAGCAACATAAGGTACTGGATACACAATGGGTTTGTCACAATTGACTCAGAGAAAATGTCCAAGTCACTTGGAAACTTCTTCACTATTCGGCAGGTTATAGACCTTTATCATCCACTGGCTTTGAGACTCTTCTTGATCGGGACACACTATCGATCTCCCATAAATTACTCAGACGCACTTCTTGAAAGTGCATCGGATCGTGTCTTTTATATTTATCAGACACTACATGATTGTGAAGATGTTTTGAGCCAGCACGATGAGGCAAATCGGACGGATAGGATTCCACCTGAAACTTTGAATTGCATAAATAAGTTTGATGAAGTATTTTTGAGTTCAATGTCGGATGATCTTCACACTCCTGTTGTTTTGGCTGCGTTGTCTGAACCCTTGAAAACTGCCAATGATCTTCTACATACCAGAAAGGGGAAAAAGCAAGCACTGCGAGTAGAATCCCTTTCAGCTTTAGAAAAGACAATGAGAAATGTTCTTATTATATTAGGCCTTATGCCTACAAGTTACTCTGAGGTTTTGCAGCAACTTAGGGAGAAGGCACTGAAACGCGCAAAGTTGACCGAAGATCAAGTACTACAAAAAATTGATGAAAGGACTATGGCAAGAAAGAATAAAGATTATGAAAAATCTGATACAATAAGGAAAGAGTTAGCTGCTTTGGGTATTGCTCTTATGGACAGCCCAGAGGGAACTACTTGGAGACCAGCTGTTCCTCTTGCATTGCAAGAACAGCCGGTTGCATCAGCATGAACCTTTTGGGGTAAATCATTAATCATAACCTAGAAAAATTGTGAATTATTATCTCATTTTTAAACAGGTTAGAGATTTGAAAATTTAAGTTGAATTCTCTAAGAAAATTTTGGTAGTGTTGCCTTGTAATTATACGTTTATTCAATGCGAAACTACTAATTCCGTTAAAGAAAATTACATGTTTCTGTATCTTTAATTCTTTTATGACTCAAACAATTGAGCACACAAACTCTTGTGATATGTTTATTGAGTTCTAATGCTCGACTA

Network for GWHGAAZE028897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01406.20	tRNA-synt_1e	96	134	1.40E-10
PF01406.20	tRNA-synt_1e	166	429	8.00E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01883	CARS, cysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006423	biological_process	cysteinyl-tRNA aminoacylation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004817	molecular_function	cysteine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.184
	SRR3591706	second leaf	8.475
	SRR3591707	mature leaf	7.562
	SRR3591708	Shoot apex	7.723
	SRR3591709	Stem	3.958
	SRR3591710	White floral bud	4.538
	SRR3591711	White flower	9.191
	SRR3591712	Green floral bud	6.833
	SRR3591713	Yellow flower	10.399
SRP173429	SRR8316895	Juvenile bud stage	2.955
	SRR8316896	Juvenile bud stage	4.746
	SRR8316897	Juvenile bud stage	2.258
	SRR8316894	Third green stage	1.954
	SRR8316900	Third green stage	7.766
	SRR8316901	Third green stage	6.620
	SRR8316898	Complete white stage	2.052
	SRR8316899	Complete white stage	6.899
	SRR8316903	Complete white stage	2.788
	SRR8316902	Silver flowering stage	2.429
	SRR8316904	Silver flowering stage	4.275
	SRR8316905	Silver flowering stage	1.979
	SRR8316906	Gold flowering stage	6.557
	SRR8316907	Gold flowering stage	4.627
	SRR8316908	Gold flowering stage	6.721
SRP132670	SRR6706286	Control	1.963
	SRR6706287	Light intensity 50%	2.492
	SRR6706288	Light intensity 20%	2.741
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.441
	CNS0095593	Slightly white alabastrum(diploid) 2	3.088
	CNS0095594	Slightly white alabastrum(diploid) 3	2.441
	CNS0095595	Whole white alabastrum(diploid) 2	2.513
	CNS0095596	Whole white alabastrum(diploid) 3	2.522
	CNS0095597	Whole white alabastrum(diploid) 4	2.357
	CNS0095598	Silvery flower (diploied) 1	4.735
	CNS0095599	Silvery flower (diploied) 2	2.382
	CNS0095600	Silvery flower (diploied) 3	4.475
	CNS0095601	Golden flower (diploid) 1	2.418
	CNS0095602	Golden flower (diploid) 2	5.144
	CNS0095603	Golden flower (diploid) 3	4.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.789
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.849
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.921
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.219
	CNS0095610	Silvery flower (tetraploid) 1	4.012
	CNS0095611	Silvery flower (tetraploid) 2	4.366
	CNS0095612	Silvery flower (tetraploid) 3	3.116
	CNS0095613	Golden flower (tetraploid) 1	1.910
	CNS0095614	Golden flower (tetraploid) 2	3.723
	CNS0095615	Golden flower (tetraploid) 3	2.971
CRA001975	CRR073297	Stem 1	3.105
	CRR073298	Stem 2	2.455
	CRR073299	Stem 3	2.163
	CRR073300	Leaf 1	4.203
	CRR073301	Leaf 2	2.574
	CRR073302	Leaf 3	2.071
	CRR073303	Juvenile bud 1	2.160
	CRR073304	Juvenile bud 2	1.589
	CRR073305	Juvenile bud 3	2.281
	CRR073306	Third green 1	0.357
	CRR073307	Third green 2	0.203
	CRR073308	Third green 3	0.322
	CRR073309	Second white 1	1.470
	CRR073310	Second white 2	1.665
	CRR073311	Second white 3	2.029
	CRR073312	Silver flowering 1	1.054
	CRR073313	Silver flowering 2	0.611
	CRR073314	Silver flowering 3	1.197
	CRR073315	Gold flowering 1	4.691
	CRR073316	Gold flowering 2	6.430
	CRR073317	Gold flowering 3	1.938
	CRR073318	Tawny withering 1	0.800
	CRR073319	Tawny withering 2	1.848
	CRR073320	Tawny withering 3	0.967