Gene detail

Detail information of GWHGAAZE028841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007221978.1	0	hypothetical protein PRUPE_ppa002807mg [Prunus persica]
COG	YP_003267965.1	6E-19	serine/threonine protein kinase
Swissprot	tr\|Q9FY48\|KEG_ARATH	4E-37	E3 ubiquitin-protein ligase KEG
trEMBL	tr\|M5XAP9\|M5XAP9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23177.1}
TAIR10	AT4G32250.3	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	70580301	70585801	-
GWHAAZE00000008	mRNA	70580301	70585801	-
GWHAAZE00000008	exon	70580301	70581273	-
GWHAAZE00000008	exon	70583666	70584139	-
GWHAAZE00000008	exon	70585070	70585161	-
GWHAAZE00000008	exon	70585448	70585801	-
GWHAAZE00000008	CDS	70585448	70585801	-
GWHAAZE00000008	CDS	70585070	70585161	-
GWHAAZE00000008	CDS	70583666	70584139	-
GWHAAZE00000008	CDS	70580301	70581273	-

Transcript Sequence
>GWHTAAZE028875 ATGGCTGGACAAGTTGTTGCCAATCGATCAACAGCAGCATTTGAGTTTGAGATTGTTGAAGGTGATTCTGATACAAAAGTTGTACAATTGCCGATTAATCCATGGATCGATCCATCAAGTATTAAACTTAGGCATAGAATTGGAAGGGGTCCATTTGGTGATGTTTGGTTAGCTACTCATCATCAAGCAACTGAAGATTATGAAGAGTACCATGAAGTAGCTGTCAAAATGCTGCATCCTTTTAAAGAGGATGACTTCAAGGCTGTATTGAATAAATTGGATGAACTGTTTTCTAATTGTAAAGGGCTGCAAGGTGTTTGTTGGCTTTATGGTATTTCAATTATCAGTGGAAAGATTTGCATTGTCATGAAATTCTACGAGGGTTCAGTTGGTGATAAAATGGCTCGCCTTAAAGGGGGAAAGCTTTCATTGAGTGATGTTTTGAGGTATGGGATTGATCTGGCTCAGGGAATTATGGAGCTACATTTAAAAGGGATTCTAGTTCTTAACCTTAAACCTTTTAATTTCCTCCTGGATGTTGAAAACCGAGCTATTTTGGGTGATATAGGGATTCCTCACGTGCTGCTTGGGGTTCAGCTCCCGAGTTCAGATATGACTCGGAGACTCGGTACACCAAACTACATGGCTCCTGAACAATGGCAACCAGAAGTACGAGGTCCGATTTCCTTTGAGACTGATTCATGGGGATTTGGTTGCAGTGTTGTGGAGATGTTGACTGGTATTCAGCCTTGGTGTGGTATGTCTATTGATGAAATATACAACTCAGTTGTGAAAAGGGAAGAAAAACCGCGTATTCCTACCGGCCTTCCTCCTGAAGTTGAGAATGTCATTATTGGTTGTTTCGAGTATGATTTTAGGAGTCGTCCTTCGATGGCAGACATATTACTTGCCTTTAAAAGTTCGCAGAATGCAGTTTACCGTGATGGAGAGTGGACAGGTCTTGGGAGTAGAACAATTACAGAAAAACCAAACCCTTATGGCTACACCGAATGGTTCCTTTCAAAAGATGTTCTCCAAATTGGTGACATGGTGCGGTCCAGAAAGCCGCCCAACTCGTGCAAACCTGAAAACATGGACATCCCAGACGGTACAATTGTTGGTTTAGAACGTGACACCGAAAGGAGTGGGTTTGTTTTAGTGCGGGTCCACGGAATACACGACCCGGTTAGAGTCCACGGATCTACGCTGGAGCGAGTCACATTTGGCTTAGCAGCAGGGGATTGGGTTCGCCTGAAGATGGAAGACAATAAGCATTCCCCGGTGGGTATTCTTCATTCAATTCACCGTGATGGAACCGTGGCTGTTGGATTCATAGGGGTGGAGACCCTCTGGATGGGCATGTTTATGGACCTCGAAATGGCGGAGTCTTTTTGTGTGGGCCAGTTTGTGAGGCTGAAATCGAACGTATTTAGCCCTCGATTCAAATGGCCAAGAAAAATAGGCGGCGAGTGGACCACTGGAAAAATTTCCCGGGTCCTACCCAACGGGTGTCTTTTGGTCAAGTTCCCGAGCAGATTGACGTTTGGAGATGAGAGTAGGTTCATGGCCGATCCGGCTGAAGTAGAGCTTGTTTCTTTTAATACTTGTACTGGTATAGTGAAAAAGTACCAACATCTTGAAGATTTTCATTGGGGGGTGAGGCCATTTTTAATCACCTTTGGGCTATTTACTGCCATGAAGCTAGGGTTATTCTTTGGGAAGAAAATGGGGCAGTTGAAGGTGAAGGTGAAGGTGAAGAAAGCACGGAATCCAACGATGCAAAATGAAAGTCAACAAATTGACGGTCAGAATTCTGGGTGGCAGCTTCCTCCAAAAGTGGCCAATATAATTTTCAGGGAAGGCAGTAGCACCACTGCCGCCACCGCCCAATAG

Network for GWHGAAZE028841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	41	302	5.60E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.699
	SRR3591706	second leaf	18.404
	SRR3591707	mature leaf	31.371
	SRR3591708	Shoot apex	22.453
	SRR3591709	Stem	31.633
	SRR3591710	White floral bud	32.149
	SRR3591711	White flower	56.759
	SRR3591712	Green floral bud	24.952
	SRR3591713	Yellow flower	56.425
SRP173429	SRR8316895	Juvenile bud stage	19.578
	SRR8316896	Juvenile bud stage	25.796
	SRR8316897	Juvenile bud stage	8.957
	SRR8316894	Third green stage	12.334
	SRR8316900	Third green stage	30.621
	SRR8316901	Third green stage	31.695
	SRR8316898	Complete white stage	20.403
	SRR8316899	Complete white stage	73.377
	SRR8316903	Complete white stage	34.708
	SRR8316902	Silver flowering stage	48.687
	SRR8316904	Silver flowering stage	69.148
	SRR8316905	Silver flowering stage	35.931
	SRR8316906	Gold flowering stage	136.992
	SRR8316907	Gold flowering stage	146.901
	SRR8316908	Gold flowering stage	129.457
SRP132670	SRR6706286	Control	36.213
	SRR6706287	Light intensity 50%	35.246
	SRR6706288	Light intensity 20%	35.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.580
	CNS0095593	Slightly white alabastrum(diploid) 2	16.689
	CNS0095594	Slightly white alabastrum(diploid) 3	17.597
	CNS0095595	Whole white alabastrum(diploid) 2	14.568
	CNS0095596	Whole white alabastrum(diploid) 3	11.960
	CNS0095597	Whole white alabastrum(diploid) 4	16.609
	CNS0095598	Silvery flower (diploied) 1	34.522
	CNS0095599	Silvery flower (diploied) 2	33.451
	CNS0095600	Silvery flower (diploied) 3	101.144
	CNS0095601	Golden flower (diploid) 1	38.201
	CNS0095602	Golden flower (diploid) 2	102.956
	CNS0095603	Golden flower (diploid) 3	100.845
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.820
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.099
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.865
	CNS0095610	Silvery flower (tetraploid) 1	94.501
	CNS0095611	Silvery flower (tetraploid) 2	86.707
	CNS0095612	Silvery flower (tetraploid) 3	43.506
	CNS0095613	Golden flower (tetraploid) 1	80.610
	CNS0095614	Golden flower (tetraploid) 2	89.744
	CNS0095615	Golden flower (tetraploid) 3	179.278
CRA001975	CRR073297	Stem 1	33.016
	CRR073298	Stem 2	31.836
	CRR073299	Stem 3	31.979
	CRR073300	Leaf 1	41.389
	CRR073301	Leaf 2	35.209
	CRR073302	Leaf 3	28.023
	CRR073303	Juvenile bud 1	35.659
	CRR073304	Juvenile bud 2	40.064
	CRR073305	Juvenile bud 3	40.664
	CRR073306	Third green 1	13.975
	CRR073307	Third green 2	11.750
	CRR073308	Third green 3	13.961
	CRR073309	Second white 1	20.859
	CRR073310	Second white 2	31.926
	CRR073311	Second white 3	31.176
	CRR073312	Silver flowering 1	44.212
	CRR073313	Silver flowering 2	41.232
	CRR073314	Silver flowering 3	54.436
	CRR073315	Gold flowering 1	22.746
	CRR073316	Gold flowering 2	33.506
	CRR073317	Gold flowering 3	23.169
	CRR073318	Tawny withering 1	25.817
	CRR073319	Tawny withering 2	19.941
	CRR073320	Tawny withering 3	21.623