Gene detail

Detail information of GWHGAAZE028653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004493946.1	4.57972E-48	PREDICTED: 40S ribosomal protein S23-like [Cicer arietinum]
COG	YP_004004208.1	2E-27	30S ribosomal protein S12
Swissprot	tr\|Q9M5Z9\|RS23_EUPES	6E-50	40S ribosomal protein S23
trEMBL	tr\|I1NA60\|I1NA60_SOYBN	5E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36250.2}
TAIR10	AT3G09680.1	2E-40	Ribosomal protein S12/S23 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	62550980	62554214	-
GWHAAZE00000008	mRNA	62550980	62554214	-
GWHAAZE00000008	exon	62554053	62554214	-
GWHAAZE00000008	exon	62553523	62553673	-
GWHAAZE00000008	exon	62551756	62551801	-
GWHAAZE00000008	exon	62551634	62551681	-
GWHAAZE00000008	exon	62551321	62551447	-
GWHAAZE00000008	exon	62550980	62551120	-
GWHAAZE00000008	CDS	62554053	62554214	-
GWHAAZE00000008	CDS	62553523	62553673	-
GWHAAZE00000008	CDS	62551756	62551801	-
GWHAAZE00000008	CDS	62551634	62551681	-
GWHAAZE00000008	CDS	62551321	62551447	-
GWHAAZE00000008	CDS	62550980	62551120	-

Transcript Sequence
>GWHTAAZE028687 ATGTCGATGGAGAAGGAGAAGGAGGCGACGGCGACTAAGACGAGAAGGAGGCGACGGAGATGGAGAATGCGAACGGCGAGATGGAGAATGCGAACGAGACGGAGAAAGGAAGGAGGCGACGCCGATAAAAAGGGGAAGGAGACGACGGCAACGGAGATAGAGAACTTGAGTGAAACCACAAGCCCTCTTAATCCTCTTCCCCTCGTCGCCGTTGCAGGACGAGCCTCTGACTCCGGCGCAACGTCGATTTTGTCACGGAAGAAGGTGACGATTCCTCAGCCGGCGAAGAAGCTTTTCATCAAGCTCATTAAAGACGCTATTGAAGTGCACTTATCTATATATTTTGGACTTGTTAGTTGGAAGACTCGTGGAATGGGAGCTGCCGAGAAGGCAAAGATGGGTGACAATGGGATTGAGGCTAAGCAGCCCAACTCTACTTTCAGAAAGTTTGCTCGTGTTCAGCTGATTAAAAATGGGAAGAAGATTGCTGCCTTTGTACCCAATGATGGTTGCTTAAACTATATTGAGGAAAATGATGAAGTGTTGATTGCAGGATTCGAAAGGAAGGGGCATGCTGTGGGAGATATTCCTGGAGTGAAGTTCAAGCCTGTGAAGGTATCTGGTGTCTCTCTTTTTTATTTATTCAAAGAGAAGGAGGAGAAGCCAAGGTCTTAG

Network for GWHGAAZE028653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00164.26	Ribosom_S12_S23	136	223	4.70E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02973	RP-S23e, RPS23	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.570
	SRR3591706	second leaf	5.750
	SRR3591707	mature leaf	2.650
	SRR3591708	Shoot apex	3.187
	SRR3591709	Stem	4.330
	SRR3591710	White floral bud	3.208
	SRR3591711	White flower	2.869
	SRR3591712	Green floral bud	3.295
	SRR3591713	Yellow flower	1.113
SRP173429	SRR8316895	Juvenile bud stage	1.113
	SRR8316896	Juvenile bud stage	0.967
	SRR8316897	Juvenile bud stage	0.410
	SRR8316894	Third green stage	1.146
	SRR8316900	Third green stage	1.762
	SRR8316901	Third green stage	1.741
	SRR8316898	Complete white stage	1.131
	SRR8316899	Complete white stage	2.704
	SRR8316903	Complete white stage	1.247
	SRR8316902	Silver flowering stage	0.777
	SRR8316904	Silver flowering stage	0.588
	SRR8316905	Silver flowering stage	0.481
	SRR8316906	Gold flowering stage	1.681
	SRR8316907	Gold flowering stage	1.502
	SRR8316908	Gold flowering stage	0.853
SRP132670	SRR6706286	Control	4.138
	SRR6706287	Light intensity 50%	4.068
	SRR6706288	Light intensity 20%	4.425
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.435
	CNS0095593	Slightly white alabastrum(diploid) 2	2.540
	CNS0095594	Slightly white alabastrum(diploid) 3	3.147
	CNS0095595	Whole white alabastrum(diploid) 2	3.000
	CNS0095596	Whole white alabastrum(diploid) 3	3.746
	CNS0095597	Whole white alabastrum(diploid) 4	3.066
	CNS0095598	Silvery flower (diploied) 1	2.996
	CNS0095599	Silvery flower (diploied) 2	1.622
	CNS0095600	Silvery flower (diploied) 3	1.098
	CNS0095601	Golden flower (diploid) 1	3.961
	CNS0095602	Golden flower (diploid) 2	1.044
	CNS0095603	Golden flower (diploid) 3	0.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.699
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.995
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.713
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.750
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.410
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.584
	CNS0095610	Silvery flower (tetraploid) 1	2.249
	CNS0095611	Silvery flower (tetraploid) 2	1.898
	CNS0095612	Silvery flower (tetraploid) 3	1.920
	CNS0095613	Golden flower (tetraploid) 1	2.147
	CNS0095614	Golden flower (tetraploid) 2	3.361
	CNS0095615	Golden flower (tetraploid) 3	1.153
CRA001975	CRR073297	Stem 1	2.378
	CRR073298	Stem 2	1.360
	CRR073299	Stem 3	0.905
	CRR073300	Leaf 1	2.099
	CRR073301	Leaf 2	2.634
	CRR073302	Leaf 3	0.509
	CRR073303	Juvenile bud 1	0.659
	CRR073304	Juvenile bud 2	0.547
	CRR073305	Juvenile bud 3	0.562
	CRR073306	Third green 1	0.245
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.105
	CRR073309	Second white 1	0.054
	CRR073310	Second white 2	0.319
	CRR073311	Second white 3	0.178
	CRR073312	Silver flowering 1	0.414
	CRR073313	Silver flowering 2	0.040
	CRR073314	Silver flowering 3	0.097
	CRR073315	Gold flowering 1	0.179
	CRR073316	Gold flowering 2	0.800
	CRR073317	Gold flowering 3	0.176
	CRR073318	Tawny withering 1	1.483
	CRR073319	Tawny withering 2	1.534
	CRR073320	Tawny withering 3	0.864