Gene detail

Detail information of GWHGAAZE028610

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007013747.1	Phosphatase 2A regulatory B subunit family protein [Theobroma cacao]
Swissprot	tr\|Q93YV6\|2A5I_ARATH	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform
trEMBL	tr\|A0A061GPA8\|A0A061GPA8_THECC	Phosphatase 2A regulatory B subunit family protein {ECO:0000313\|EMBL:EOY31366.1}
TAIR10	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	61084047	61087122	+
GWHAAZE00000008	mRNA	61084047	61087122	+
GWHAAZE00000008	exon	61084047	61085204	+
GWHAAZE00000008	exon	61086781	61087122	+
GWHAAZE00000008	CDS	61084047	61085204	+
GWHAAZE00000008	CDS	61086781	61087122	+

Transcript Sequence
>GWHTAAZE028644 ATGTGGAAGCAAATTCTCAGTAGACTTCCTCGGAAGTCGTTGAAATCGGATTCAACTGATTCCCCTAGGTGTGGTTCAGGCTCACTTAACAACCCTAACCCTAGCATTGCCATTCAAAGATCACAAAGCTTGAATGCGAGTTCTGTTCGGAATAATGCTGCTAGAAGAATGTCCTCAGCAGTGTTTCCGGCGAGTGTGGTGGCCGGAGTTGAGCCTCTTTTAGCATTCAAAGATGTTCCGAATTCAGAGAAGATGAATCTGTTTATCAGTAAATTAAGTCTTTGTTGTATGGTTTTTGACTTTAGTGATCCAAGTAAGAACACGACAGAGAAAGATCTTAAACGTATAACATTGATTGAGCTTCTTGATTTTGTTGCTTCGGGTCCCCCTAGGTTTTCGGAACCCGCAATCCTAGCAATGTGTAAAATGTGTGCTGTTAACTTGTTCCGAGTTTTCCCTCCTAATTACCGGTCTAATTCTCATTCCAGTGAGAATGATGATGATGAACCAATGTTTGATCCGGCTTGGACACATTTACAACTTGTTTATGATATACTACTCAAGTTTGTAACCTGTTCTTCGGTTGAAGCGAAGGTAGCGAAAAAGTATATTAATCATTCGTTTATCTTGAAATTGCTTGAACTCTTTGAATCCGAGGATCCTAGGGAAAGGGAATGCTTGAAAGCTATTATGCATAGGATTTACGGGAAGTTCATGGTACACAGGCCTTATATCCGTAAGAATATAAGCAATATCTTTTATCGGTTTGTTTTTGAAACTGAGAAACATAATGGGATTGCTGAGTTGTTAGAGATTTTTGGTAGTGTAATTACTGGGTTCGCATTACCTTTGAAGGAGGAGCATAAGATCTTTTTGTGGAGGGCGTTAATTCCTCTGCACAAGCCAAAATGTTTAGGGGTTTACTTTCAGCAATTGTCGTATTGTATTACACAGTTTATCGAGAAGGAACCGAAGTTAGCTAGCACTGTGATTCGGGGATTGTTGAAATATTGGCCAGTTACCAATAGTCAGAAGGAGGTGATGTTCCTTGGTGAGGTAGAAGAGATTCTTGAAGCAATTAACATGGCCGAGTTTCATAAGGTCATGATTCCATTATTCTGGCGGATTGGATGCTGTATCACCAGTTTCCATTTTCAGGTGGCTGAGAGGGCACTGTTCTTATGGAACAATGACCAGATTATCAATCTGATCGGACATAACCGCCACGTGATCCTACCTCTCATACTACCAGCATTGGAGAAAAACACCCGGACCCACTGGAACCAATCGGTCCTTAACCTAACCCTAAATGTGCGAAAAATGTTCACCGAAATGGACGACGTTCTATTCCTCGCCTGCCATTCCCGGTTCAGGGAAGAACAAGAAAGACAAATCCTAGCCAAAGAAAGGCGCAAGGTAGCATGGGAACGGCTAGAGAGTGCTGCAGCTCGTCTCCAGCCTATGGTCGGAAATACAGCGGTTCTAGTATCAACTCCCTAG

Network for GWHGAAZE028610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	75	482	3.30E-174

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.971
	SRR3591706	second leaf	2.227
	SRR3591707	mature leaf	0.098
	SRR3591708	Shoot apex	19.663
	SRR3591709	Stem	4.791
	SRR3591710	White floral bud	5.504
	SRR3591711	White flower	3.275
	SRR3591712	Green floral bud	11.251
	SRR3591713	Yellow flower	0.378
SRP173429	SRR8316895	Juvenile bud stage	7.010
	SRR8316896	Juvenile bud stage	9.330
	SRR8316897	Juvenile bud stage	5.504
	SRR8316894	Third green stage	4.225
	SRR8316900	Third green stage	10.813
	SRR8316901	Third green stage	9.896
	SRR8316898	Complete white stage	0.353
	SRR8316899	Complete white stage	4.470
	SRR8316903	Complete white stage	1.424
	SRR8316902	Silver flowering stage	0.640
	SRR8316904	Silver flowering stage	0.798
	SRR8316905	Silver flowering stage	0.247
	SRR8316906	Gold flowering stage	0.609
	SRR8316907	Gold flowering stage	0.522
	SRR8316908	Gold flowering stage	1.185
SRP132670	SRR6706286	Control	3.029
	SRR6706287	Light intensity 50%	3.309
	SRR6706288	Light intensity 20%	3.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.208
	CNS0095593	Slightly white alabastrum(diploid) 2	9.201
	CNS0095594	Slightly white alabastrum(diploid) 3	9.883
	CNS0095595	Whole white alabastrum(diploid) 2	10.339
	CNS0095596	Whole white alabastrum(diploid) 3	10.527
	CNS0095597	Whole white alabastrum(diploid) 4	10.903
	CNS0095598	Silvery flower (diploied) 1	8.725
	CNS0095599	Silvery flower (diploied) 2	4.543
	CNS0095600	Silvery flower (diploied) 3	2.320
	CNS0095601	Golden flower (diploid) 1	3.882
	CNS0095602	Golden flower (diploid) 2	2.805
	CNS0095603	Golden flower (diploid) 3	2.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.264
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.872
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.767
	CNS0095610	Silvery flower (tetraploid) 1	1.366
	CNS0095611	Silvery flower (tetraploid) 2	1.985
	CNS0095612	Silvery flower (tetraploid) 3	2.324
	CNS0095613	Golden flower (tetraploid) 1	0.552
	CNS0095614	Golden flower (tetraploid) 2	1.012
	CNS0095615	Golden flower (tetraploid) 3	0.349
CRA001975	CRR073297	Stem 1	11.559
	CRR073298	Stem 2	10.181
	CRR073299	Stem 3	10.378
	CRR073300	Leaf 1	7.080
	CRR073301	Leaf 2	7.431
	CRR073302	Leaf 3	4.558
	CRR073303	Juvenile bud 1	4.624
	CRR073304	Juvenile bud 2	2.486
	CRR073305	Juvenile bud 3	3.174
	CRR073306	Third green 1	1.421
	CRR073307	Third green 2	0.659
	CRR073308	Third green 3	0.978
	CRR073309	Second white 1	0.643
	CRR073310	Second white 2	0.535
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.747
	CRR073313	Silver flowering 2	0.509
	CRR073314	Silver flowering 3	0.520
	CRR073315	Gold flowering 1	0.807
	CRR073316	Gold flowering 2	0.551
	CRR073317	Gold flowering 3	0.474
	CRR073318	Tawny withering 1	4.189
	CRR073319	Tawny withering 2	3.627
	CRR073320	Tawny withering 3	5.499