Detail information of GWHGAAZE028525


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010665675.17.97E-113PREDICTED: protein PEROXIN-4 isoform X2 [Beta vulgaris subsp. vulgaris]
COGYP_008797956.14E-13ubiquitin-conjugating enzyme E2-like protein
Swissprottr|Q8LGF7|PEX4_ARATH5E-112Protein PEROXIN-4
trEMBLtr|A0A067GJ63|A0A067GJ63_CITSI1E-112Uncharacterized protein {ECO:0000313|EMBL:KDO79748.1}
TAIR10AT5G25760.26E-88peroxin4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5907678959082398-
GWHAAZE00000008mRNA5907678959082398-
GWHAAZE00000008exon5908239359082398-
GWHAAZE00000008exon5908044759080566-
GWHAAZE00000008exon5908024359080371-
GWHAAZE00000008exon5907963959079768-
GWHAAZE00000008exon5907678959076877-
GWHAAZE00000008CDS5908239359082398-
GWHAAZE00000008CDS5908044759080566-
GWHAAZE00000008CDS5908024359080371-
GWHAAZE00000008CDS5907963959079768-
GWHAAZE00000008CDS5907678959076877-
Transcript Sequence

Network for GWHGAAZE028525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con71471.40E-46
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.070
SRR3591706second leaf42.690
SRR3591707mature leaf46.727
SRR3591708Shoot apex45.426
SRR3591709Stem77.099
SRR3591710White floral bud78.784
SRR3591711White flower102.647
SRR3591712Green floral bud88.285
SRR3591713Yellow flower96.957
SRP173429 SRR8316895Juvenile bud stage 48.480
SRR8316896Juvenile bud stage 62.515
SRR8316897Juvenile bud stage 27.208
SRR8316894Third green stage 23.689
SRR8316900Third green stage 85.172
SRR8316901Third green stage 69.044
SRR8316898Complete white stage 46.926
SRR8316899Complete white stage 119.946
SRR8316903Complete white stage 60.187
SRR8316902Silver flowering stage50.725
SRR8316904Silver flowering stage56.864
SRR8316905Silver flowering stage28.854
SRR8316906Gold flowering stage 106.512
SRR8316907Gold flowering stage 121.041
SRR8316908Gold flowering stage 104.758
SRP132670SRR6706286Control73.324
SRR6706287Light intensity 50%83.076
SRR6706288Light intensity 20%78.991
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.049
CNS0095593Slightly white alabastrum(diploid) 270.404
CNS0095594Slightly white alabastrum(diploid) 370.209
CNS0095595Whole white alabastrum(diploid) 266.491
CNS0095596Whole white alabastrum(diploid) 352.372
CNS0095597Whole white alabastrum(diploid) 462.659
CNS0095598Silvery flower (diploied) 170.091
CNS0095599Silvery flower (diploied) 270.081
CNS0095600Silvery flower (diploied) 376.498
CNS0095601Golden flower (diploid) 169.564
CNS0095602Golden flower (diploid) 280.135
CNS0095603Golden flower (diploid) 374.094
CNS0095604Slightly white alabastrum(tetraploid) 159.873
CNS0095605Slightly white alabastrum(tetraploid) 257.724
CNS0095606Slightly white alabastrum(tetraploid) 370.642
CNS0095607Whole white alabastrum(tetraploid) 158.370
CNS0095608Whole white alabastrum(tetraploid) 249.470
CNS0095609Whole white alabastrum(tetraploid) 358.764
CNS0095610Silvery flower (tetraploid) 184.137
CNS0095611Silvery flower (tetraploid) 280.800
CNS0095612Silvery flower (tetraploid) 386.981
CNS0095613Golden flower (tetraploid) 179.561
CNS0095614Golden flower (tetraploid) 282.565
CNS0095615Golden flower (tetraploid) 385.927
CRA001975CRR073297Stem 161.190
CRR073298Stem 258.060
CRR073299Stem 357.641
CRR073300Leaf 170.535
CRR073301Leaf 275.475
CRR073302Leaf 363.170
CRR073303Juvenile bud 168.085
CRR073304Juvenile bud 278.173
CRR073305Juvenile bud 352.221
CRR073306Third green 145.753
CRR073307Third green 255.470
CRR073308Third green 353.023
CRR073309Second white 151.186
CRR073310Second white 257.432
CRR073311Second white 343.914
CRR073312Silver flowering 140.579
CRR073313Silver flowering 238.101
CRR073314Silver flowering 331.324
CRR073315Gold flowering 144.752
CRR073316Gold flowering 250.781
CRR073317Gold flowering 335.848
CRR073318Tawny withering 156.205
CRR073319Tawny withering 251.614
CRR073320Tawny withering 355.426