Detail information of GWHGAAZE028518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010648508.10PREDICTED: L-gulonolactone oxidase [Vitis vinifera]
COGYP_435799.17E-35FAD/FMN-containing dehydrogenase
trEMBLtr|F6H3E8|F6H3E8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46712.1}
TAIR10AT5G11540.10D-arabinono-1,4-lactone oxidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5889216458895929-
GWHAAZE00000008mRNA5889216458895929-
GWHAAZE00000008exon5889216458892981-
GWHAAZE00000008exon5889343158893686-
GWHAAZE00000008exon5889524658895929-
GWHAAZE00000008CDS5889524658895929-
GWHAAZE00000008CDS5889343158893686-
GWHAAZE00000008CDS5889216458892981-
Transcript Sequence

Network for GWHGAAZE028518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01565.24FAD_binding_4621945.70E-15
PF04030.15ALO4115302.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00103GULO Metabolic pathways map01100
Ascorbate and aldarate metabolismmap00053

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0003885molecular_functionD-arabinono-1,4-lactone oxidase activity
GO:0071949molecular_functionFAD binding
GO:0050660molecular_functionflavin adenine dinucleotide binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.951
SRR3591706second leaf2.325
SRR3591707mature leaf0.367
SRR3591708Shoot apex2.104
SRR3591709Stem12.351
SRR3591710White floral bud4.027
SRR3591711White flower2.142
SRR3591712Green floral bud1.859
SRR3591713Yellow flower2.396
SRP173429 SRR8316895Juvenile bud stage 0.849
SRR8316896Juvenile bud stage 1.258
SRR8316897Juvenile bud stage 0.837
SRR8316894Third green stage 1.089
SRR8316900Third green stage 4.021
SRR8316901Third green stage 3.985
SRR8316898Complete white stage 0.906
SRR8316899Complete white stage 1.138
SRR8316903Complete white stage 1.089
SRR8316902Silver flowering stage0.854
SRR8316904Silver flowering stage0.797
SRR8316905Silver flowering stage0.345
SRR8316906Gold flowering stage 1.367
SRR8316907Gold flowering stage 0.819
SRR8316908Gold flowering stage 2.347
SRP132670SRR6706286Control3.148
SRR6706287Light intensity 50%3.285
SRR6706288Light intensity 20%2.564
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.702
CNS0095593Slightly white alabastrum(diploid) 20.952
CNS0095594Slightly white alabastrum(diploid) 31.439
CNS0095595Whole white alabastrum(diploid) 21.096
CNS0095596Whole white alabastrum(diploid) 31.509
CNS0095597Whole white alabastrum(diploid) 41.011
CNS0095598Silvery flower (diploied) 12.576
CNS0095599Silvery flower (diploied) 21.732
CNS0095600Silvery flower (diploied) 32.096
CNS0095601Golden flower (diploid) 12.349
CNS0095602Golden flower (diploid) 23.107
CNS0095603Golden flower (diploid) 33.666
CNS0095604Slightly white alabastrum(tetraploid) 10.968
CNS0095605Slightly white alabastrum(tetraploid) 20.913
CNS0095606Slightly white alabastrum(tetraploid) 34.571
CNS0095607Whole white alabastrum(tetraploid) 11.662
CNS0095608Whole white alabastrum(tetraploid) 20.849
CNS0095609Whole white alabastrum(tetraploid) 32.855
CNS0095610Silvery flower (tetraploid) 12.359
CNS0095611Silvery flower (tetraploid) 21.686
CNS0095612Silvery flower (tetraploid) 30.464
CNS0095613Golden flower (tetraploid) 11.943
CNS0095614Golden flower (tetraploid) 22.506
CNS0095615Golden flower (tetraploid) 32.822
CRA001975CRR073297Stem 10.760
CRR073298Stem 20.648
CRR073299Stem 30.713
CRR073300Leaf 10.784
CRR073301Leaf 20.688
CRR073302Leaf 31.486
CRR073303Juvenile bud 10.060
CRR073304Juvenile bud 20.113
CRR073305Juvenile bud 30.376
CRR073306Third green 12.247
CRR073307Third green 23.311
CRR073308Third green 31.977
CRR073309Second white 10.125
CRR073310Second white 20.043
CRR073311Second white 30.191
CRR073312Silver flowering 10.324
CRR073313Silver flowering 20.153
CRR073314Silver flowering 30.314
CRR073315Gold flowering 10.525
CRR073316Gold flowering 20.565
CRR073317Gold flowering 30.550
CRR073318Tawny withering 12.997
CRR073319Tawny withering 22.029
CRR073320Tawny withering 36.470