Gene detail

Detail information of GWHGAAZE028511

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010925910.1	0	PREDICTED: casein kinase I-like [Elaeis guineensis]
COG	YP_002759577.1	3E-20	putative serine/threonine protein kinase
Swissprot	tr\|P42158\|KC1D_ARATH	5E-158	Casein kinase I isoform delta-like
trEMBL	tr\|A0A061GRJ7\|A0A061GRJ7_THECC	0	Casein kinase I-like 3 isoform 1 {ECO:0000313\|EMBL:EOY29724.1}
TAIR10	AT4G28880.1	4E-149	casein kinase I-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58754730	58759247	+
GWHAAZE00000008	mRNA	58754730	58759247	+
GWHAAZE00000008	exon	58754730	58754823	+
GWHAAZE00000008	exon	58754951	58754991	+
GWHAAZE00000008	exon	58755858	58755927	+
GWHAAZE00000008	exon	58756034	58756182	+
GWHAAZE00000008	exon	58757246	58757341	+
GWHAAZE00000008	exon	58757450	58757520	+
GWHAAZE00000008	exon	58758145	58758206	+
GWHAAZE00000008	exon	58758303	58758366	+
GWHAAZE00000008	exon	58758728	58758812	+
GWHAAZE00000008	exon	58759083	58759247	+
GWHAAZE00000008	CDS	58754730	58754823	+
GWHAAZE00000008	CDS	58754951	58754991	+
GWHAAZE00000008	CDS	58755858	58755927	+
GWHAAZE00000008	CDS	58756034	58756182	+
GWHAAZE00000008	CDS	58757246	58757341	+
GWHAAZE00000008	CDS	58757450	58757520	+
GWHAAZE00000008	CDS	58758145	58758206	+
GWHAAZE00000008	CDS	58758303	58758366	+
GWHAAZE00000008	CDS	58758728	58758812	+
GWHAAZE00000008	CDS	58759083	58759247	+

Transcript Sequence
>GWHTAAZE028545 AGCAACAGAGATATTTTGATGGAGAGGATAGTAGGAGGCAAGTACAAGCTTGGTCGTAAGATCGGTAGTGGTTCCTTCGGTGAAATCTTTCTCGCTACTCATGTGGATACGTTTGAGATCGTTGCGGTTAAGATTGAAAATAGGCAAACAAAACACCCGCAGTTGCTTTATGAGGCCAAGCTGTATAGCCTTCTTCAGGGAGTAAGTGGTGTTGCTAACATAAAATGGTGTGGGGTAGATGGAGAGGACAACATCTTAGTCCTTGATTTGCTAGGGCCGAGTCTTGAAGACCTCTTTGTGTATTGTGGGAGGAAGTTTTCCCTGAAAACCGTTCTTATGTTGGCTGATCAGATGATTTCAAGAGTAGAGTTAGTGCATGCTAAAGGCTTTCTGCATAGGGATATCAAACCAGATAACTTCTTAATGGGTCTTGGGAGGAAAGCAAATCAGGTCTATATTATTGATTTTGGACTTGCAAAAAGATTTCGTGAACCCACTACAAGCCGCCATATTCCTTACAGAGAGAACAAAAACCTAACAGGGACTGCACGCTACGCGAGTTGCAATACTCATATGGGCATTGAGCAAAGCCGTCGCGATGATTTGGAGTCTCTTGGCTATGTTTTTCTCTACTTCTTGAGAGGAAGCCTTCCGTGGCAGGGTCTTAAAGCTGCAACTAAGAAGCAAAAGTATGACAAAATATGTGAAAAGAAGTTATCAACGCCTATTGAGGTTTTGTGCAAGTCTCATCCAGTAGAGTTTGCATCTTACTTTCACTATTGCCACTCATTAACATTTGATCAGCGTCCTGATTATGGATTCTTGAAGCGCCTGTTTCATGACTTGTTCACTCGTGAAGGTATATATATATAATATATAAACTCACCAAATGCTTGA

Network for GWHGAAZE028511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	15	233	2.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.258
	SRR3591706	second leaf	16.082
	SRR3591707	mature leaf	27.469
	SRR3591708	Shoot apex	19.820
	SRR3591709	Stem	39.769
	SRR3591710	White floral bud	50.748
	SRR3591711	White flower	52.861
	SRR3591712	Green floral bud	37.067
	SRR3591713	Yellow flower	81.913
SRP173429	SRR8316895	Juvenile bud stage	11.005
	SRR8316896	Juvenile bud stage	18.816
	SRR8316897	Juvenile bud stage	10.682
	SRR8316894	Third green stage	8.195
	SRR8316900	Third green stage	25.872
	SRR8316901	Third green stage	22.095
	SRR8316898	Complete white stage	23.229
	SRR8316899	Complete white stage	55.707
	SRR8316903	Complete white stage	39.485
	SRR8316902	Silver flowering stage	27.067
	SRR8316904	Silver flowering stage	42.245
	SRR8316905	Silver flowering stage	20.204
	SRR8316906	Gold flowering stage	67.768
	SRR8316907	Gold flowering stage	65.971
	SRR8316908	Gold flowering stage	61.237
SRP132670	SRR6706286	Control	13.289
	SRR6706287	Light intensity 50%	16.729
	SRR6706288	Light intensity 20%	17.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.291
	CNS0095593	Slightly white alabastrum(diploid) 2	8.319
	CNS0095594	Slightly white alabastrum(diploid) 3	8.618
	CNS0095595	Whole white alabastrum(diploid) 2	8.600
	CNS0095596	Whole white alabastrum(diploid) 3	6.414
	CNS0095597	Whole white alabastrum(diploid) 4	11.191
	CNS0095598	Silvery flower (diploied) 1	21.511
	CNS0095599	Silvery flower (diploied) 2	17.531
	CNS0095600	Silvery flower (diploied) 3	48.994
	CNS0095601	Golden flower (diploid) 1	20.199
	CNS0095602	Golden flower (diploid) 2	51.922
	CNS0095603	Golden flower (diploid) 3	54.844
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.956
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.311
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.068
	CNS0095610	Silvery flower (tetraploid) 1	44.766
	CNS0095611	Silvery flower (tetraploid) 2	41.051
	CNS0095612	Silvery flower (tetraploid) 3	35.684
	CNS0095613	Golden flower (tetraploid) 1	36.866
	CNS0095614	Golden flower (tetraploid) 2	38.406
	CNS0095615	Golden flower (tetraploid) 3	104.065
CRA001975	CRR073297	Stem 1	14.101
	CRR073298	Stem 2	15.309
	CRR073299	Stem 3	9.302
	CRR073300	Leaf 1	16.270
	CRR073301	Leaf 2	13.722
	CRR073302	Leaf 3	13.532
	CRR073303	Juvenile bud 1	14.751
	CRR073304	Juvenile bud 2	14.266
	CRR073305	Juvenile bud 3	22.077
	CRR073306	Third green 1	20.452
	CRR073307	Third green 2	18.391
	CRR073308	Third green 3	17.739
	CRR073309	Second white 1	23.644
	CRR073310	Second white 2	20.638
	CRR073311	Second white 3	23.701
	CRR073312	Silver flowering 1	23.868
	CRR073313	Silver flowering 2	21.339
	CRR073314	Silver flowering 3	18.046
	CRR073315	Gold flowering 1	12.032
	CRR073316	Gold flowering 2	16.424
	CRR073317	Gold flowering 3	11.585
	CRR073318	Tawny withering 1	16.175
	CRR073319	Tawny withering 2	15.085
	CRR073320	Tawny withering 3	20.250