Gene detail

Detail information of GWHGAAZE028507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006450678.1	2.0578E-144	hypothetical protein CICLE_v10009310mg [Citrus clementina]
COG	YP_006362975.1	4E-20	ribosomal RNA-processing protein RRP41/SKI6
Swissprot	tr\|Q84T68\|EXOS5_ORYSJ	7E-108	Exosome complex exonuclease RRP46 homolog
trEMBL	tr\|V4TTQ0\|V4TTQ0_9ROSI	8E-145	Uncharacterized protein {ECO:0000313\|EMBL:ESR63918.1}
TAIR10	AT3G46210.6	7E-109	Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58649173	58657137	+
GWHAAZE00000008	mRNA	58649173	58657137	+
GWHAAZE00000008	exon	58649173	58649278	+
GWHAAZE00000008	exon	58650223	58650336	+
GWHAAZE00000008	exon	58651171	58651271	+
GWHAAZE00000008	exon	58654065	58654100	+
GWHAAZE00000008	exon	58654452	58654524	+
GWHAAZE00000008	exon	58654607	58654674	+
GWHAAZE00000008	exon	58654919	58655051	+
GWHAAZE00000008	exon	58657025	58657137	+
GWHAAZE00000008	CDS	58649173	58649278	+
GWHAAZE00000008	CDS	58650223	58650336	+
GWHAAZE00000008	CDS	58651171	58651271	+
GWHAAZE00000008	CDS	58654065	58654100	+
GWHAAZE00000008	CDS	58654452	58654524	+
GWHAAZE00000008	CDS	58654607	58654674	+
GWHAAZE00000008	CDS	58654919	58655051	+
GWHAAZE00000008	CDS	58657025	58657137	+

Transcript Sequence
>GWHTAAZE028541 ATGGAAATAGATAGGGCAGATGGCCGTTCGCCGAATCAGTTGAGATTGCTCGCTTGTTCTAGAAGCACCCTAAATCGTGCCCATGGTTCTGCAAGTTGGTCTCAAGGGGAGACTAAGGTTCTTGCTGCAGTTTACGGACCTAAAGCTGGAACAAAGAAGAATGAAAACCCAGAAAAGGCTTGCATTGAAGTCATTTGGAAGCCAAAAACCGGACAGATTGGCAAACCGGAAAAAGAGTACGAGATGATACTGAAGAAAACATTGCAAAGCATCTGCCTTCTGACAGTCAATCCAAATACCACAACTTCAATAATAGTTCAGGTTGTCAACGATGATGGTGCCGTATCCTTCATATTACTACTCCCATGTGCTATAAATGCGGCTTGTGCGGCCCTTGTAGATGCTGGAATTCCTTTGAAGCATCTTGCCGTTGCAATATGCTGTTGTCTAACGGAAAGTGGAGTGGTTATGCTGGACCCGAACAAGCTTGAAGAACAGAAAATGAAGGCATTTGTATATTTGGTTTTCCCGAACTCGATTGTGTCTGCACTTCCCGAAGGATCGTCAAAGGTTGGAGGCGAGCCGATGGAACATGGGATAATTTCATCTGTTACACACGGAGTAATGTCAGTGGATGATTACCTTCACTGCCTGCAAAGGGGACGTGCTGCCAGCGCAAAGTTGTCAGGTTTTCTTAGGAGAAGCTTGCAGTTGCAGCAGCAAGAAGTCCCACCACCAAAGTGA

Network for GWHGAAZE028507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	13	138	2.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12590	RRP46, EXOSC5	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.451
	SRR3591706	second leaf	1.769
	SRR3591707	mature leaf	1.220
	SRR3591708	Shoot apex	6.688
	SRR3591709	Stem	1.694
	SRR3591710	White floral bud	5.294
	SRR3591711	White flower	5.080
	SRR3591712	Green floral bud	5.581
	SRR3591713	Yellow flower	4.061
SRP173429	SRR8316895	Juvenile bud stage	6.183
	SRR8316896	Juvenile bud stage	7.508
	SRR8316897	Juvenile bud stage	4.264
	SRR8316894	Third green stage	1.855
	SRR8316900	Third green stage	8.310
	SRR8316901	Third green stage	8.790
	SRR8316898	Complete white stage	1.553
	SRR8316899	Complete white stage	15.118
	SRR8316903	Complete white stage	5.509
	SRR8316902	Silver flowering stage	2.705
	SRR8316904	Silver flowering stage	4.326
	SRR8316905	Silver flowering stage	1.204
	SRR8316906	Gold flowering stage	3.907
	SRR8316907	Gold flowering stage	4.867
	SRR8316908	Gold flowering stage	5.919
SRP132670	SRR6706286	Control	5.888
	SRR6706287	Light intensity 50%	6.434
	SRR6706288	Light intensity 20%	8.231
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.589
	CNS0095593	Slightly white alabastrum(diploid) 2	9.709
	CNS0095594	Slightly white alabastrum(diploid) 3	8.711
	CNS0095595	Whole white alabastrum(diploid) 2	4.854
	CNS0095596	Whole white alabastrum(diploid) 3	5.551
	CNS0095597	Whole white alabastrum(diploid) 4	3.460
	CNS0095598	Silvery flower (diploied) 1	6.763
	CNS0095599	Silvery flower (diploied) 2	4.880
	CNS0095600	Silvery flower (diploied) 3	4.744
	CNS0095601	Golden flower (diploid) 1	6.339
	CNS0095602	Golden flower (diploid) 2	4.971
	CNS0095603	Golden flower (diploid) 3	4.951
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.649
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.888
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.851
	CNS0095610	Silvery flower (tetraploid) 1	1.292
	CNS0095611	Silvery flower (tetraploid) 2	1.401
	CNS0095612	Silvery flower (tetraploid) 3	0.685
	CNS0095613	Golden flower (tetraploid) 1	1.300
	CNS0095614	Golden flower (tetraploid) 2	0.766
	CNS0095615	Golden flower (tetraploid) 3	0.551
CRA001975	CRR073297	Stem 1	10.211
	CRR073298	Stem 2	11.838
	CRR073299	Stem 3	10.249
	CRR073300	Leaf 1	11.654
	CRR073301	Leaf 2	11.101
	CRR073302	Leaf 3	7.418
	CRR073303	Juvenile bud 1	9.580
	CRR073304	Juvenile bud 2	6.360
	CRR073305	Juvenile bud 3	8.371
	CRR073306	Third green 1	1.265
	CRR073307	Third green 2	1.144
	CRR073308	Third green 3	1.781
	CRR073309	Second white 1	2.797
	CRR073310	Second white 2	2.892
	CRR073311	Second white 3	1.999
	CRR073312	Silver flowering 1	2.230
	CRR073313	Silver flowering 2	2.371
	CRR073314	Silver flowering 3	1.624
	CRR073315	Gold flowering 1	4.768
	CRR073316	Gold flowering 2	9.863
	CRR073317	Gold flowering 3	7.012
	CRR073318	Tawny withering 1	13.315
	CRR073319	Tawny withering 2	7.866
	CRR073320	Tawny withering 3	12.266